DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LAPRVNLTFRKILL
Uniprot ID:
Q6NS38
Source protein:
DNA oxidative demethylase ALKBH2
Source gene:
ALKBH2
Class:
DEG_ODPH_VHL_1
Location:
245:258
E3 ligase:
VHL
DEGRON score:
0.5345
ASA_SCORE:
47.4357
COIL:
0.4357
CONS_SCORE:
0.6948
DSS_SCORE:
0.2647
HELIX:
0.0479
FCONS_SCORE:
1.1546
RIG_SCORE:
0.8913
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V240M
TCGA-AX-A2HD
UCEC
TCGA
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.1944
p.V240M
DO42608
UCEC
ICGC
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.1944
p.K242M
TCGA-DS-A1OC
CESC
TCGA
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.3611
p.K242M
DO6329
CESC
ICGC
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.3611
p.S237R
TCGA-ED-A459
LIHC
TCGA
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.1111
p.S237R
DO44974
LIHC
ICGC
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.1111
p.K261T
TCGA-EO-A3AY
UCEC
TCGA
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.3611
p.K261T
DO43202
UCEC
ICGC
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.3611
p.R254C
TCGA-KL-8323
KICH
TCGA
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.719
p.R254C
DO220331
KICH
ICGC
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.719
p.P239R
TCGA-L5-A8NE
ESCA
TCGA
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.1667
p.Y235H
SIDM00537
Colorectal Carcinoma
GDSC
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.0556
p.Y235H
ACH-000982
Colon/Colorectal Cancer
CCLE
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.0556
p.Y235H
ACH-001345
Colon/Colorectal Cancer
CCLE
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.0556
p.Y235H
GP5d
large_intestine
COSMIC
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.0556
p.R254H
SIDM00534
Colorectal Carcinoma
GDSC
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.7133
p.R254H
ACH-000986
Colon/Colorectal Cancer
CCLE
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.7133
p.R254H
HT-115
large_intestine
COSMIC
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.7133
p.V244I
SIDM01693
B-Lymphoblastic Leukemia
GDSC
LAPRVNLTFRKILL
DEG_ODPH_VHL_1
0.3056
Drug responses associated with ALKBH2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAPRVNLTFRKILL
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q6NS38
DNA oxidative demethylase ALKBH2
DEG_ODPH_VHL_1
245:258
LAPRVNLTFRKILL
VHL
0.5345
More...