DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LAPYSD
Uniprot ID:
P02647
Source protein:
Apolipoprotein A-I
Source gene:
APOA1
Class:
LIG_APCC_ABBA_1
Location:
187:192
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.886
ASA_SCORE:
56.2
COIL:
0.1347
CONS_SCORE:
0.7151
DSS_SCORE:
0.3454
HELIX:
0.862
FCONS_SCORE:
1.138
RIG_SCORE:
0.7679
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S191N
TCGA-L5-A8NM
ESCA
TCGA
LAPYSD
LIG_APCC_ABBA_1
0.7069
p.A199V
DO233282
GACA
ICGC
LAPYSD
LIG_APCC_ABBA_1
0.1389
p.R179G
ACH-000965
Endometrial/Uterine Cancer
CCLE
LAPYSD
LIG_APCC_ABBA_1
0.1111
p.R179G
RL95-2
endometrium
COSMIC
LAPYSD
LIG_APCC_ABBA_1
0.1111
p.R201G
RL95-2
endometrium
COSMIC
LAPYSD
LIG_APCC_ABBA_1
0.0833
p.R177C
TCGA-BR-8589
STAD
TCGA
LAPYSD
LIG_APCC_ABBA_1
0.0556
p.R177C
DO47813
STAD
ICGC
LAPYSD
LIG_APCC_ABBA_1
0.0556
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Drug responses associated with APOA1 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of LAPYSD
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P02647
Apolipoprotein A-I
LIG_APCC_ABBA_1
187:192
LAPYSD
APC,CDC20,FZR1
0.886
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