DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LCNTPRTS
Uniprot ID:
O95196
Source protein:
Chondroitin sulfate proteoglycan 5
Source gene:
CSPG5
Class:
DEG_SCF_FBW7_1
Location:
490:497
E3 ligase:
FBXW7
DEGRON score:
0.9745
ASA_SCORE:
82.6
COIL:
0.9143
CONS_SCORE:
0.3996
DSS_SCORE:
0.5261
HELIX:
0.0478
FCONS_SCORE:
0.6722
RIG_SCORE:
0.6724
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E481K
TCGA-AX-A06H
UCEC
TCGA
LCNTPRTS
DEG_SCF_FBW7_1
0.0833
p.E481K
TCGA-K4-AAQO
BLCA
TCGA
LCNTPRTS
DEG_SCF_FBW7_1
0.0833
p.E481K
DO219030
BLCA
ICGC
LCNTPRTS
DEG_SCF_FBW7_1
0.0833
p.E481K
DO43530
UCEC
ICGC
LCNTPRTS
DEG_SCF_FBW7_1
0.0833
p.R495S
TCGA-D3-A2J6
SKCM
TCGA
LCNTPRTS
DEG_SCF_FBW7_1
0.6316
p.R495S
DO37901
SKCM
ICGC
LCNTPRTS
DEG_SCF_FBW7_1
0.6316
p.T496I
TCGA-FP-7998
STAD
TCGA
LCNTPRTS
DEG_SCF_FBW7_1
0.5966
p.T496I
DO38190
STAD
ICGC
LCNTPRTS
DEG_SCF_FBW7_1
0.5966
p.S497Y
TCGA-H4-A2HQ
BLCA
TCGA
LCNTPRTS
DEG_SCF_FBW7_1
0.712
p.S497Y
DO522
BLCA
ICGC
LCNTPRTS
DEG_SCF_FBW7_1
0.712
p.R495C
DO234350
ESAD
ICGC
LCNTPRTS
DEG_SCF_FBW7_1
0.719
p.R495C
DO51082
PRAD
ICGC
LCNTPRTS
DEG_SCF_FBW7_1
0.719
p.S490N
DO24940
LUAD
ICGC
LCNTPRTS
DEG_SCF_FBW7_1
0.7069
p.K494N
DO40884
UCEC
ICGC
LCNTPRTS
DEG_SCF_FBW7_1
0.6918
p.A505V
DO41199
UCEC
ICGC
LCNTPRTS
DEG_SCF_FBW7_1
0.1111
p.H506D
SIDM00381
Cervical Carcinoma
GDSC
LCNTPRTS
DEG_SCF_FBW7_1
0.0833
p.H506D
SKG-IIIa
cervix
COSMIC
LCNTPRTS
DEG_SCF_FBW7_1
0.0833
p.R495H
SIDM01770
Gastric Carcinoma
GDSC
LCNTPRTS
DEG_SCF_FBW7_1
0.7133
p.S483Y
SIDM00500
Colorectal Carcinoma
GDSC
LCNTPRTS
DEG_SCF_FBW7_1
0.1389
p.S483Y
ACH-000959
Colon/Colorectal Cancer
CCLE
LCNTPRTS
DEG_SCF_FBW7_1
0.1389
Drug responses associated with CSPG5 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LCNTPRTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95196
Chondroitin sulfate proteoglycan 5
DEG_SCF_FBW7_1
490:497
LCNTPRTS
FBXW7
0.9745
More...