DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
LDLFPE
Uniprot ID:
P23471
Source protein:
Receptor-type tyrosine-protein phosphatase zeta
Source gene:
PTPRZ1
Class:
LIG_APCC_ABBA_1
Location:
415:420
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9524
ASA_SCORE:
76.5333
COIL:
0.6733
CONS_SCORE:
0.6091
DSS_SCORE:
0.4945
HELIX:
0.1748
FCONS_SCORE:
1.0835
RIG_SCORE:
0.8564
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D411Y
TCGA-67-3771
LUAD
TCGA
LDLFPE
LIG_APCC_ABBA_1
0.2222
p.D411Y
DO25797
LUAD
ICGC
LDLFPE
LIG_APCC_ABBA_1
0.2222
p.D411N
TCGA-D9-A4Z3
SKCM
TCGA
LDLFPE
LIG_APCC_ABBA_1
0.2222
p.D411N
DO47555
SKCM
ICGC
LDLFPE
LIG_APCC_ABBA_1
0.2222
p.L417I
TCGA-EY-A1GI
UCEC
TCGA
LDLFPE
LIG_APCC_ABBA_1
0.6063
p.L417I
DO41211
UCEC
ICGC
LDLFPE
LIG_APCC_ABBA_1
0.6063
p.D416Y
DO229018
LICA
ICGC
LDLFPE
LIG_APCC_ABBA_1
0.6214
p.V406F
DO229031
LICA
ICGC
LDLFPE
LIG_APCC_ABBA_1
0.0833
p.D407N
SIDM00789
Colorectal Carcinoma
GDSC
LDLFPE
LIG_APCC_ABBA_1
0.1111
p.D407N
ACH-000997
Colon/Colorectal Cancer
CCLE
LDLFPE
LIG_APCC_ABBA_1
0.1111
p.D407N
ACH-001061
Colon/Colorectal Cancer
CCLE
LDLFPE
LIG_APCC_ABBA_1
0.1111
p.D407N
HCT-15
large_intestine
COSMIC
LDLFPE
LIG_APCC_ABBA_1
0.1111
p.P409S
SIDM00641
Burkitt's Lymphoma
GDSC
LDLFPE
LIG_APCC_ABBA_1
0.1667
Drug responses associated with PTPRZ1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LDLFPE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P23471
Receptor-type tyrosine-protein phosphatase zeta
LIG_APCC_ABBA_1
415:420
LDLFPE
APC,CDC20,FZR1
0.9524
More...