DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LDPFID
Uniprot ID:
Q96S65
Source protein:
Cysteine/serine-rich nuclear protein 1
Source gene:
CSRNP1
Class:
LIG_APCC_ABBA_1
Location:
567:572
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9956
ASA_SCORE:
73.7
COIL:
0.7982
CONS_SCORE:
0.4331
DSS_SCORE:
0.4712
HELIX:
0.1537
FCONS_SCORE:
1.0519
RIG_SCORE:
0.7898
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A564T
TCGA-AZ-6601
COAD
TCGA
LDPFID
LIG_APCC_ABBA_1
0.25
p.A564T
TCGA-B5-A11H
UCEC
TCGA
LDPFID
LIG_APCC_ABBA_1
0.25
p.A564T
DO8119
COAD
ICGC
LDPFID
LIG_APCC_ABBA_1
0.25
p.A564T
DO42825
UCEC
ICGC
LDPFID
LIG_APCC_ABBA_1
0.25
p.P569S
TCGA-DA-A3F3
SKCM
TCGA
LDPFID
LIG_APCC_ABBA_1
0.6752
p.P569S
TCGA-FS-A1Z3
SKCM
TCGA
LDPFID
LIG_APCC_ABBA_1
0.6752
p.P569S
DO228203
LICA
ICGC
LDPFID
LIG_APCC_ABBA_1
0.6752
p.P569S
DO222420
MELA
ICGC
LDPFID
LIG_APCC_ABBA_1
0.6752
p.P569S
DO37635
SKCM
ICGC
LDPFID
LIG_APCC_ABBA_1
0.6752
p.P569S
DO37607
SKCM
ICGC
LDPFID
LIG_APCC_ABBA_1
0.6752
p.S560C
TCGA-E7-A5KF
BLCA
TCGA
LDPFID
LIG_APCC_ABBA_1
0.1389
p.S560C
DO44038
BLCA
ICGC
LDPFID
LIG_APCC_ABBA_1
0.1389
p.A563D
DO229026
LICA
ICGC
LDPFID
LIG_APCC_ABBA_1
0.2222
p.Q574K
DO229037
LICA
ICGC
LDPFID
LIG_APCC_ABBA_1
0.2778
p.S582F
DO23540
LIRI
ICGC
LDPFID
LIG_APCC_ABBA_1
0.0556
Drug responses associated with CSRNP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LDPFID
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q96S65
Cysteine/serine-rich nuclear protein 1
LIG_APCC_ABBA_1
567:572
LDPFID
APC,CDC20,FZR1
0.9956
More...