DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LFVFTD
Uniprot ID:
O00534
Source protein:
von Willebrand factor A domain-containing protein 5A
Source gene:
VWA5A
Class:
LIG_APCC_ABBA_1
Location:
389:394
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5734
ASA_SCORE:
10.2833
COIL:
0.189
CONS_SCORE:
0.7268
DSS_SCORE:
0.2237
HELIX:
0.0065
FCONS_SCORE:
1.3277
RIG_SCORE:
0.8608
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S402G
TCGA-BR-6566
STAD
TCGA
LFVFTD
LIG_APCC_ABBA_1
0.1111
p.S402G
DO38217
STAD
ICGC
LFVFTD
LIG_APCC_ABBA_1
0.1111
p.T400M
TCGA-EO-A22R
UCEC
TCGA
LFVFTD
LIG_APCC_ABBA_1
0.1667
p.T400M
DO42713
UCEC
ICGC
LFVFTD
LIG_APCC_ABBA_1
0.1667
p.T400M
SIDM00376
B-Lymphoblastic Leukemia
GDSC
LFVFTD
LIG_APCC_ABBA_1
0.1667
p.P386L
TCGA-YD-A89C
SKCM
TCGA
LFVFTD
LIG_APCC_ABBA_1
0.25
p.P386L
DO219501
SKCM
ICGC
LFVFTD
LIG_APCC_ABBA_1
0.25
p.E396K
DO225190
BRCA
ICGC
LFVFTD
LIG_APCC_ABBA_1
0.2778
p.E396K
DO227561
BRCA
ICGC
LFVFTD
LIG_APCC_ABBA_1
0.2778
p.E391K
DO50014
BRCA
ICGC
LFVFTD
LIG_APCC_ABBA_1
0.7022
p.G384V
DO48753
LIRI
ICGC
LFVFTD
LIG_APCC_ABBA_1
0.1944
p.R392K
DO229502
SKCA
ICGC
LFVFTD
LIG_APCC_ABBA_1
0.7237
p.L400F
DO48546
SKCM
ICGC
LFVFTD
LIG_APCC_ABBA_1
0.1667
p.L400F
DO37429
SKCM
ICGC
LFVFTD
LIG_APCC_ABBA_1
0.1667
p.P393S
DO38467
STAD
ICGC
LFVFTD
LIG_APCC_ABBA_1
0.6752
p.L399I
DO51742
STAD
ICGC
LFVFTD
LIG_APCC_ABBA_1
0.1944
p.V398I
DO48174
UCEC
ICGC
LFVFTD
LIG_APCC_ABBA_1
0.2222
p.Q388L
SIDM00650
Small Cell Lung Carcinoma
GDSC
LFVFTD
LIG_APCC_ABBA_1
0.3056
p.Q388L
NCI-H128
lung
COSMIC
LFVFTD
LIG_APCC_ABBA_1
0.3056
p.S402T
SIDM00381
Cervical Carcinoma
GDSC
LFVFTD
LIG_APCC_ABBA_1
0.1111
p.S402T
SKG-IIIa
cervix
COSMIC
LFVFTD
LIG_APCC_ABBA_1
0.1111
p.I392M
ACH-001991
Primary
CCLE
LFVFTD
LIG_APCC_ABBA_1
0.7618
p.D379N
huH-1
liver
COSMIC
LFVFTD
LIG_APCC_ABBA_1
0.0556
p.Q404L
NCI-H128
lung
COSMIC
LFVFTD
LIG_APCC_ABBA_1
0.0556
Drug responses associated with VWA5A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LFVFTD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00534
von Willebrand factor A domain-containing protein 5A
LIG_APCC_ABBA_1
389:394
LFVFTD
APC,CDC20,FZR1
0.5734
More...