DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LFVHRD
Uniprot ID:
P19404
Source protein:
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
Source gene:
NDUFV2
Class:
LIG_APCC_ABBA_1
Location:
38:43
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9523
ASA_SCORE:
66.6833
COIL:
0.5885
CONS_SCORE:
0.3627
DSS_SCORE:
0.5779
HELIX:
0.0975
FCONS_SCORE:
1.2076
RIG_SCORE:
0.753
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P52Q
TCGA-BF-A1PU
SKCM
TCGA
LFVHRD
LIG_APCC_ABBA_1
0.0833
p.P52Q
DO50278
SKCM
ICGC
LFVHRD
LIG_APCC_ABBA_1
0.0833
p.N32S
TCGA-DD-AADC
LIHC
TCGA
LFVHRD
LIG_APCC_ABBA_1
0.1667
p.N32S
DO52230
LIHC
ICGC
LFVHRD
LIG_APCC_ABBA_1
0.1667
p.D43Y
TCGA-EO-A22R
UCEC
TCGA
LFVHRD
LIG_APCC_ABBA_1
0.7325
p.D43Y
DO42713
UCEC
ICGC
LFVHRD
LIG_APCC_ABBA_1
0.7325
p.V29A
DO229010
COCA
ICGC
LFVHRD
LIG_APCC_ABBA_1
0.0833
p.V29A
DO229013
COCA
ICGC
LFVHRD
LIG_APCC_ABBA_1
0.0833
p.V29A
DO229016
COCA
ICGC
LFVHRD
LIG_APCC_ABBA_1
0.0833
p.V29A
DO229003
COCA
ICGC
LFVHRD
LIG_APCC_ABBA_1
0.0833
p.V29A
DO225404
LAML
ICGC
LFVHRD
LIG_APCC_ABBA_1
0.0833
p.V29F
DO229022
LICA
ICGC
LFVHRD
LIG_APCC_ABBA_1
0.0833
p.V40M
SIDM01090
Colorectal Carcinoma
GDSC
LFVHRD
LIG_APCC_ABBA_1
0.6097
p.V40M
SIDM00690
Head and Neck Carcinoma
GDSC
LFVHRD
LIG_APCC_ABBA_1
0.6097
p.V40M
SIDM00694
Other Solid Cancers
GDSC
LFVHRD
LIG_APCC_ABBA_1
0.6097
p.F39C
SIDM00598
Squamous Cell Lung Carcinoma
GDSC
LFVHRD
LIG_APCC_ABBA_1
0.5996
p.F39C
SIDM00233
T-Lymphoblastic Leukemia
GDSC
LFVHRD
LIG_APCC_ABBA_1
0.5996
p.F39C
ACH-000843
Lung Cancer
CCLE
LFVHRD
LIG_APCC_ABBA_1
0.5996
p.F39C
ACH-002058
Leukemia
CCLE
LFVHRD
LIG_APCC_ABBA_1
0.5996
p.F39C
HARA
lung
COSMIC
LFVHRD
LIG_APCC_ABBA_1
0.5996
p.F39C
ATN-1
haematopoietic_and_lymphoid_tissue
COSMIC
LFVHRD
LIG_APCC_ABBA_1
0.5996
p.N48S
SIDM00878
Breast Carcinoma
GDSC
LFVHRD
LIG_APCC_ABBA_1
0.1944
p.N48S
ACH-000930
Breast Cancer
CCLE
LFVHRD
LIG_APCC_ABBA_1
0.1944
p.N48S
HCC1569
breast
COSMIC
LFVHRD
LIG_APCC_ABBA_1
0.1944
p.E46K
SIDM00248
Gastric Carcinoma
GDSC
LFVHRD
LIG_APCC_ABBA_1
0.25
p.E46K
ACH-000758
Gastric Cancer
CCLE
LFVHRD
LIG_APCC_ABBA_1
0.25
p.N51S
HCC1569
breast
COSMIC
LFVHRD
LIG_APCC_ABBA_1
0.5556
p.F42C
ATN-1
haematopoietic_and_lymphoid_tissue
COSMIC
LFVHRD
LIG_APCC_ABBA_1
0.7108
p.F42C
HARA
lung
COSMIC
LFVHRD
LIG_APCC_ABBA_1
0.7108
Drug responses associated with NDUFV2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LFVHRD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P19404
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
LIG_APCC_ABBA_1
38:43
LFVHRD
APC,CDC20,FZR1
0.9523
More...