DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LGIYKE
Uniprot ID:
Q92994
Source protein:
Transcription factor IIIB 90 kDa subunit
Source gene:
BRF1
Class:
LIG_APCC_ABBA_1
Location:
498:503
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8922
ASA_SCORE:
115.7667
COIL:
0.8073
CONS_SCORE:
0.3841
DSS_SCORE:
0.4769
HELIX:
0.1648
FCONS_SCORE:
0.9305
RIG_SCORE:
0.7168
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R513W
TCGA-AA-3713
COAD
TCGA
LGIYKE
LIG_APCC_ABBA_1
0.0556
p.A493V
TCGA-AP-A1E1
UCEC
TCGA
LGIYKE
LIG_APCC_ABBA_1
0.1944
p.A493V
TCGA-AX-A1CE
UCEC
TCGA
LGIYKE
LIG_APCC_ABBA_1
0.1944
p.K502N
TCGA-BR-4370
STAD
TCGA
LGIYKE
LIG_APCC_ABBA_1
0.5806
p.E495D
TCGA-VS-A9UH
CESC
TCGA
LGIYKE
LIG_APCC_ABBA_1
0.25
p.Q490K
DO42857
UCEC
ICGC
LGIYKE
LIG_APCC_ABBA_1
0.1111
p.A494T
DO42761
UCEC
ICGC
LGIYKE
LIG_APCC_ABBA_1
0.6667
p.P506T
SIDM00393
Gastric Carcinoma
GDSC
LGIYKE
LIG_APCC_ABBA_1
0.25
p.P506T
SK-GT-2
stomach
COSMIC
LGIYKE
LIG_APCC_ABBA_1
0.25
p.A493P
SIDM00210
Ovarian Carcinoma
GDSC
LGIYKE
LIG_APCC_ABBA_1
0.1944
p.A493P
ACH-000657
Ovarian Cancer
CCLE
LGIYKE
LIG_APCC_ABBA_1
0.1944
p.A493P
A2780
ovary
COSMIC
LGIYKE
LIG_APCC_ABBA_1
0.1944
p.S504F
C-33-A
cervix
COSMIC
LGIYKE
LIG_APCC_ABBA_1
0.3056
p.G503R
HEC-1
endometrium
COSMIC
LGIYKE
LIG_APCC_ABBA_1
0.7568
Drug responses associated with BRF1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LGIYKE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q92994
Transcription factor IIIB 90 kDa subunit
LIG_APCC_ABBA_1
498:503
LGIYKE
APC,CDC20,FZR1
0.8922
More...