DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
LGMHVE
Uniprot ID:
Q7Z7H5
Source protein:
Transmembrane emp24 domain-containing protein 4
Source gene:
TMED4
Class:
LIG_APCC_ABBA_1
Location:
75:80
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6087
ASA_SCORE:
24.7833
COIL:
0.1097
CONS_SCORE:
0.5153
DSS_SCORE:
0.4397
HELIX:
0.0075
FCONS_SCORE:
1.2267
RIG_SCORE:
0.734
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K65Q
TCGA-B1-A657
KIRP
TCGA
LGMHVE
LIG_APCC_ABBA_1
0.5
p.K65Q
DO51552
KIRP
ICGC
LGMHVE
LIG_APCC_ABBA_1
0.5
p.P84L
TCGA-FR-A726
SKCM
TCGA
LGMHVE
LIG_APCC_ABBA_1
0.2222
p.P84L
DO48665
SKCM
ICGC
LGMHVE
LIG_APCC_ABBA_1
0.2222
p.K65N
TCGA-HF-A5NB
STAD
TCGA
LGMHVE
LIG_APCC_ABBA_1
0.5
p.K65N
DO50127
STAD
ICGC
LGMHVE
LIG_APCC_ABBA_1
0.5
p.L90M
DO229045
LICA
ICGC
LGMHVE
LIG_APCC_ABBA_1
0.0556
p.K82T
SIDM01588
Endometrial Carcinoma
GDSC
LGMHVE
LIG_APCC_ABBA_1
0.7222
p.K82T
ACH-000993
Endometrial/Uterine Cancer
CCLE
LGMHVE
LIG_APCC_ABBA_1
0.7222
p.G86D
ACH-001610
Brain Cancer
CCLE
LGMHVE
LIG_APCC_ABBA_1
0.1667
Drug responses associated with TMED4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LGMHVE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q7Z7H5
Transmembrane emp24 domain-containing protein 4
LIG_APCC_ABBA_1
75:80
LGMHVE
APC,CDC20,FZR1
0.6087
More...