DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LGPFAD
Uniprot ID:
O00192
Source protein:
Armadillo repeat protein deleted in velo-cardio-facial syndrome
Source gene:
ARVCF
Class:
LIG_APCC_ABBA_1
Location:
155:160
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9792
ASA_SCORE:
58.0167
COIL:
0.8465
CONS_SCORE:
0.373
DSS_SCORE:
0.3835
HELIX:
0.0788
FCONS_SCORE:
0.8838
RIG_SCORE:
0.7105
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G152D
TCGA-BR-8591
STAD
TCGA
LGPFAD
LIG_APCC_ABBA_1
0.25
p.D160G
TCGA-CC-A7IH
LIHC
TCGA
LGPFAD
LIG_APCC_ABBA_1
0.7198
p.R165Q
TCGA-CQ-A4CI
HNSC
TCGA
LGPFAD
LIG_APCC_ABBA_1
0.1944
p.R170C
TCGA-DF-A2KN
UCEC
TCGA
LGPFAD
LIG_APCC_ABBA_1
0.0556
p.R170C
TCGA-QQ-A8VF
SARC
TCGA
LGPFAD
LIG_APCC_ABBA_1
0.0556
p.R165W
TCGA-FP-A4BE
STAD
TCGA
LGPFAD
LIG_APCC_ABBA_1
0.1944
p.F167L
TCGA-FS-A1ZB
SKCM
TCGA
LGPFAD
LIG_APCC_ABBA_1
0.1389
p.A162T
TCGA-L5-A8NV
ESCA
TCGA
LGPFAD
LIG_APCC_ABBA_1
0.2778
p.P157L
DO229346
LAML
ICGC
LGPFAD
LIG_APCC_ABBA_1
0.6471
p.P157L
DO230548
LUSC
ICGC
LGPFAD
LIG_APCC_ABBA_1
0.6471
p.T165P
DO26540
LUSC
ICGC
LGPFAD
LIG_APCC_ABBA_1
0.1944
p.P154L
DO229502
SKCA
ICGC
LGPFAD
LIG_APCC_ABBA_1
0.3056
p.D150N
SIDM00662
Melanoma
GDSC
LGPFAD
LIG_APCC_ABBA_1
0.1944
p.D150N
SIDM00985
Burkitt's Lymphoma
GDSC
LGPFAD
LIG_APCC_ABBA_1
0.1944
p.D150N
SIDM00731
Small Cell Lung Carcinoma
GDSC
LGPFAD
LIG_APCC_ABBA_1
0.1944
p.D150N
SIDM01517
Head and Neck Carcinoma
GDSC
LGPFAD
LIG_APCC_ABBA_1
0.1944
p.G151S
SIDM01113
Other Sarcomas
GDSC
LGPFAD
LIG_APCC_ABBA_1
0.2222
p.G151S
ACH-000939
Sarcoma
CCLE
LGPFAD
LIG_APCC_ABBA_1
0.2222
p.G151S
SK-UT-1
soft_tissue
COSMIC
LGPFAD
LIG_APCC_ABBA_1
0.2222
p.P154Q
SIDM00335
Endometrial Carcinoma
GDSC
LGPFAD
LIG_APCC_ABBA_1
0.3056
p.P154Q
ACH-000192
Endometrial/Uterine Cancer
CCLE
LGPFAD
LIG_APCC_ABBA_1
0.3056
p.P154Q
MFE-280
endometrium
COSMIC
LGPFAD
LIG_APCC_ABBA_1
0.3056
Drug responses associated with ARVCF mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LGPFAD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00192
Armadillo repeat protein deleted in velo-cardio-facial syndrome
LIG_APCC_ABBA_1
155:160
LGPFAD
APC,CDC20,FZR1
0.9792
More...