DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
LGPFKD
Uniprot ID:
Q9ULB4
Source protein:
Cadherin-9
Source gene:
CDH9
Class:
LIG_APCC_ABBA_1
Location:
361:366
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5374
ASA_SCORE:
62
COIL:
0.774
CONS_SCORE:
0.6192
DSS_SCORE:
0.2198
HELIX:
0.0345
FCONS_SCORE:
0.9591
RIG_SCORE:
0.7687
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D376V
TCGA-06-0173
GBM
TCGA
LGPFKD
LIG_APCC_ABBA_1
0.0556
p.D376V
DO10886
GBM
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.0556
p.N351K
TCGA-5C-A9VG
LIHC
TCGA
LGPFKD
LIG_APCC_ABBA_1
0.0556
p.N351K
DO52163
LIHC
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.0556
p.N351T
TCGA-5C-A9VG
LIHC
TCGA
LGPFKD
LIG_APCC_ABBA_1
0.0556
p.N351T
DO52163
LIHC
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.0556
p.P354H
TCGA-66-2795
LUSC
TCGA
LGPFKD
LIG_APCC_ABBA_1
0.1389
p.P354H
DO23544
LIRI
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.1389
p.P354H
DO26710
LUSC
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.1389
p.V370F
TCGA-77-8136
LUSC
TCGA
LGPFKD
LIG_APCC_ABBA_1
0.2222
p.V370F
DO26593
LUSC
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.2222
p.L361M
TCGA-85-A512
LUSC
TCGA
LGPFKD
LIG_APCC_ABBA_1
0.5999
p.L361M
DO45425
LUSC
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.5999
p.L361M
DO222818
MELA
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.5999
p.T367I
TCGA-A5-A0G2
UCEC
TCGA
LGPFKD
LIG_APCC_ABBA_1
0.3056
p.T367I
DO41235
UCEC
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.3056
p.F364L
TCGA-AG-3892
READ
TCGA
LGPFKD
LIG_APCC_ABBA_1
0.6981
p.F364L
DO36394
READ
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.6981
p.P363R
TCGA-AY-4071
COAD
TCGA
LGPFKD
LIG_APCC_ABBA_1
0.7512
p.P363R
DO9146
COAD
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.7512
p.K365E
TCGA-BR-8680
STAD
TCGA
LGPFKD
LIG_APCC_ABBA_1
0.591
p.K365E
DO47769
STAD
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.591
p.E375K
TCGA-EB-A5UM
SKCM
TCGA
LGPFKD
LIG_APCC_ABBA_1
0.0833
p.E375K
DO47282
SKCM
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.0833
p.E375K
ACH-001607
Gallbladder Cancer
CCLE
LGPFKD
LIG_APCC_ABBA_1
0.0833
p.L359V
DO223377
CLLE
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.2778
p.P363L
DO6364
CLLE
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.6471
p.I372L
DO50307
ESAD
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.1667
p.H353R
DO234446
ESAD
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.1111
p.T367K
DO228974
LICA
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.3056
p.P363T
DO48727
LIRI
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.7031
p.R357Q
DO229494
SKCA
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.2222
p.R357Q
DO218863
SKCA
ICGC
LGPFKD
LIG_APCC_ABBA_1
0.2222
Drug responses associated with CDH9 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LGPFKD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9ULB4
Cadherin-9
LIG_APCC_ABBA_1
361:366
LGPFKD
APC,CDC20,FZR1
0.5374
More...