DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LGPTPGQS
Uniprot ID:
A1L4H1
Source protein:
Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D
Source gene:
SSC5D
Class:
DEG_SCF_FBW7_1
Location:
1459:1466
E3 ligase:
FBXW7
DEGRON score:
0.9475
ASA_SCORE:
76.7625
COIL:
0.9604
CONS_SCORE:
0.4409
DSS_SCORE:
0.701
HELIX:
0.0093
FCONS_SCORE:
0.9682
RIG_SCORE:
0.5069
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G1460E
DO10172
COAD
ICGC
LGPTPGQS
DEG_SCF_FBW7_1
0.6087
p.P1456S
DO230334
COCA
ICGC
LGPTPGQS
DEG_SCF_FBW7_1
0.25
p.P1456S
DO229016
COCA
ICGC
LGPTPGQS
DEG_SCF_FBW7_1
0.25
p.P1456S
DO229003
COCA
ICGC
LGPTPGQS
DEG_SCF_FBW7_1
0.25
p.P1456S
DO52365
LUSC
ICGC
LGPTPGQS
DEG_SCF_FBW7_1
0.25
p.P1456S
DO231018
LUSC
ICGC
LGPTPGQS
DEG_SCF_FBW7_1
0.25
p.P1456L
DO232064
ORCA
ICGC
LGPTPGQS
DEG_SCF_FBW7_1
0.25
p.C1473Y
SIDM02021
Esophageal Carcinoma
GDSC
LGPTPGQS
DEG_SCF_FBW7_1
0.1389
p.G1468C
SIDM00680
Colorectal Carcinoma
GDSC
LGPTPGQS
DEG_SCF_FBW7_1
0.2778
p.G1468C
ACH-000957
Colon/Colorectal Cancer
CCLE
LGPTPGQS
DEG_SCF_FBW7_1
0.2778
p.G1468C
LS-180
large_intestine
COSMIC
LGPTPGQS
DEG_SCF_FBW7_1
0.2778
p.D1450N
SIDM00630
Breast Carcinoma
GDSC
LGPTPGQS
DEG_SCF_FBW7_1
0.0833
p.D1450N
ACH-000876
Breast Cancer
CCLE
LGPTPGQS
DEG_SCF_FBW7_1
0.0833
p.D1450N
MDA-MB-415
breast
COSMIC
LGPTPGQS
DEG_SCF_FBW7_1
0.0833
p.P1453T
SIDM00767
Small Cell Lung Carcinoma
GDSC
LGPTPGQS
DEG_SCF_FBW7_1
0.1667
p.P1453T
ACH-001136
Lung Cancer
CCLE
LGPTPGQS
DEG_SCF_FBW7_1
0.1667
p.P1453T
NCI-H187
lung
COSMIC
LGPTPGQS
DEG_SCF_FBW7_1
0.1667
p.S1466N
SIDM00534
Colorectal Carcinoma
GDSC
LGPTPGQS
DEG_SCF_FBW7_1
0.7069
p.S1466N
ACH-000986
Colon/Colorectal Cancer
CCLE
LGPTPGQS
DEG_SCF_FBW7_1
0.7069
p.S1466N
HT-115
large_intestine
COSMIC
LGPTPGQS
DEG_SCF_FBW7_1
0.7069
p.P1461S
SIDM00220
Ovarian Carcinoma
GDSC
LGPTPGQS
DEG_SCF_FBW7_1
0.5641
p.P1461S
ACH-000962
Ovarian Cancer
CCLE
LGPTPGQS
DEG_SCF_FBW7_1
0.5641
p.P1461S
ACH-001145
Ovarian Cancer
CCLE
LGPTPGQS
DEG_SCF_FBW7_1
0.5641
p.P1461S
OC-314
ovary
COSMIC
LGPTPGQS
DEG_SCF_FBW7_1
0.5641
p.C1473R
SIDM00839
Colorectal Carcinoma
GDSC
LGPTPGQS
DEG_SCF_FBW7_1
0.1389
p.C1473R
ACH-000950
Colon/Colorectal Cancer
CCLE
LGPTPGQS
DEG_SCF_FBW7_1
0.1389
p.C1473R
LoVo
large_intestine
COSMIC
LGPTPGQS
DEG_SCF_FBW7_1
0.1389
Drug responses associated with SSC5D mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LGPTPGQS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A1L4H1
Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D
DEG_SCF_FBW7_1
1459:1466
LGPTPGQS
FBXW7
0.9475
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