DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LGVYFD
Uniprot ID:
Q5T160
Source protein:
Probable arginine--tRNA ligase, mitochondrial
Source gene:
RARS2
Class:
LIG_APCC_ABBA_1
Location:
259:264
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.678
ASA_SCORE:
47.7167
COIL:
0.692
CONS_SCORE:
0.5982
DSS_SCORE:
0.0251
HELIX:
0.1127
FCONS_SCORE:
1.2673
RIG_SCORE:
0.8822
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R258H
TCGA-A5-A0VP
UCEC
TCGA
LGVYFD
LIG_APCC_ABBA_1
0.3056
p.R258H
TCGA-NH-A5IV
COAD
TCGA
LGVYFD
LIG_APCC_ABBA_1
0.3056
p.R258H
DO49095
COAD
ICGC
LGVYFD
LIG_APCC_ABBA_1
0.3056
p.R258H
DO42600
UCEC
ICGC
LGVYFD
LIG_APCC_ABBA_1
0.3056
p.S270T
TCGA-EI-6882
READ
TCGA
LGVYFD
LIG_APCC_ABBA_1
0.1667
p.S270T
DO36531
READ
ICGC
LGVYFD
LIG_APCC_ABBA_1
0.1667
p.R273H
TCGA-EO-A22R
UCEC
TCGA
LGVYFD
LIG_APCC_ABBA_1
0.0833
p.R273H
DO42713
UCEC
ICGC
LGVYFD
LIG_APCC_ABBA_1
0.0833
p.G260R
SIDM02072
Colorectal Carcinoma
GDSC
LGVYFD
LIG_APCC_ABBA_1
0.6457
p.R254W
SIDM00118
Colorectal Carcinoma
GDSC
LGVYFD
LIG_APCC_ABBA_1
0.1944
p.R254W
ACH-001081
Colon/Colorectal Cancer
CCLE
LGVYFD
LIG_APCC_ABBA_1
0.1944
p.R254W
HCC2998
large_intestine
COSMIC
LGVYFD
LIG_APCC_ABBA_1
0.1944
Drug responses associated with RARS2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LGVYFD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q5T160
Probable arginine--tRNA ligase, mitochondrial
LIG_APCC_ABBA_1
259:264
LGVYFD
APC,CDC20,FZR1
0.678
More...