DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
LIMYMD
Uniprot ID:
A8MTB9
Source protein:
Carcinoembryonic antigen-related cell adhesion molecule 18
Source gene:
CEACAM18
Class:
LIG_APCC_ABBA_1
Location:
305:310
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9366
ASA_SCORE:
81.5
COIL:
0.1357
CONS_SCORE:
0.7524
DSS_SCORE:
0.1721
HELIX:
0.0023
FCONS_SCORE:
1.2023
RIG_SCORE:
0.9274
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E315G
TCGA-BH-A0BP
BRCA
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.1944
p.E315G
DO4056
BRCA
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.1944
p.M314I
TCGA-CV-7568
HNSC
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.2222
p.M314I
DO14160
HNSC
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.2222
p.D299A
TCGA-EE-A29L
SKCM
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.1667
p.D299A
DO222599
MELA
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.1667
p.D299A
DO37835
SKCM
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.1667
p.S320F
TCGA-EE-A2MJ
SKCM
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.0556
p.S320F
DO218900
SKCA
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.0556
p.S320F
DO38099
SKCM
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.0556
p.P297L
TCGA-ER-A193
SKCM
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.1111
p.P297L
DO47368
SKCM
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.1111
p.G309S
TCGA-FS-A4F0
SKCM
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.6993
p.G309S
DO37891
SKCM
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.6993
p.G309D
TCGA-FS-A4F0
SKCM
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.7198
p.G309D
DO37891
SKCM
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.7198
p.I303T
TCGA-ND-A4WC
UCS
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.2778
p.L320I
DO227935
BRCA
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.0556
p.D298G
DO222798
COCA
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.1389
p.N296T
DO234413
ESAD
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.0833
p.G302S
DO233769
GACA
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.25
p.G302S
DO224724
PACA
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.25
p.D299Y
DO231124
LUSC
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.1667
p.D319N
DO220873
MELA
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.0833
p.C296F
SIDM00973
Melanoma
GDSC
LIMYMD
LIG_APCC_ABBA_1
0.0833
p.P316H
SIDM00630
Breast Carcinoma
GDSC
LIMYMD
LIG_APCC_ABBA_1
0.1667
p.P316H
ACH-000876
Breast Cancer
CCLE
LIMYMD
LIG_APCC_ABBA_1
0.1667
p.Q314R
SIDM01016
T-Lymphoblastic Leukemia
GDSC
LIMYMD
LIG_APCC_ABBA_1
0.2222
p.Q314R
SIDM01263
T-Lymphoblastic Leukemia
GDSC
LIMYMD
LIG_APCC_ABBA_1
0.2222
p.N300K
SIDM01004
Chronic Myelogenous Leukemia
GDSC
LIMYMD
LIG_APCC_ABBA_1
0.1944
p.N300K
ACH-000983
Leukemia
CCLE
LIMYMD
LIG_APCC_ABBA_1
0.1944
p.N300K
KCL-22
haematopoietic_and_lymphoid_tissue
COSMIC
LIMYMD
LIG_APCC_ABBA_1
0.1944
p.C296G
SIDM00059
Ovarian Carcinoma
GDSC
LIMYMD
LIG_APCC_ABBA_1
0.0833
Drug responses associated with CEACAM18 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LIMYMD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A8MTB9
Carcinoembryonic antigen-related cell adhesion molecule 18
LIG_APCC_ABBA_1
305:310
LIMYMD
APC,CDC20,FZR1
0.9366
More...