DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LIMYMD
Uniprot ID:
A8MTB9
Source protein:
Carcinoembryonic antigen-related cell adhesion molecule 18
Source gene:
CEACAM18
Class:
LIG_APCC_ABBA_1
Location:
305:310
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9366
ASA_SCORE:
81.5
COIL:
0.1357
CONS_SCORE:
0.7524
DSS_SCORE:
0.1721
HELIX:
0.0023
FCONS_SCORE:
1.2023
RIG_SCORE:
0.9274
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G309D
TCGA-FS-A4F0
SKCM
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.7198
p.G309D
DO37891
SKCM
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.7198
p.G309S
TCGA-FS-A4F0
SKCM
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.6993
p.G309S
DO37891
SKCM
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.6993
p.I303T
TCGA-ND-A4WC
UCS
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.2778
p.G302S
DO233769
GACA
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.25
p.G302S
DO224724
PACA
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.25
p.M314I
TCGA-CV-7568
HNSC
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.2222
p.M314I
DO14160
HNSC
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.2222
p.Q314R
SIDM01016
T-Lymphoblastic Leukemia
GDSC
LIMYMD
LIG_APCC_ABBA_1
0.2222
p.Q314R
SIDM01263
T-Lymphoblastic Leukemia
GDSC
LIMYMD
LIG_APCC_ABBA_1
0.2222
p.E315G
TCGA-BH-A0BP
BRCA
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.1944
p.E315G
DO4056
BRCA
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.1944
p.N300K
SIDM01004
Chronic Myelogenous Leukemia
GDSC
LIMYMD
LIG_APCC_ABBA_1
0.1944
p.N300K
ACH-000983
Leukemia
CCLE
LIMYMD
LIG_APCC_ABBA_1
0.1944
p.N300K
KCL-22
haematopoietic_and_lymphoid_tissue
COSMIC
LIMYMD
LIG_APCC_ABBA_1
0.1944
p.D299A
TCGA-EE-A29L
SKCM
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.1667
p.D299A
DO222599
MELA
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.1667
p.D299A
DO37835
SKCM
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.1667
p.D299Y
DO231124
LUSC
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.1667
p.P316H
SIDM00630
Breast Carcinoma
GDSC
LIMYMD
LIG_APCC_ABBA_1
0.1667
p.P316H
ACH-000876
Breast Cancer
CCLE
LIMYMD
LIG_APCC_ABBA_1
0.1667
p.D298G
DO222798
COCA
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.1389
p.P297L
TCGA-ER-A193
SKCM
TCGA
LIMYMD
LIG_APCC_ABBA_1
0.1111
p.P297L
DO47368
SKCM
ICGC
LIMYMD
LIG_APCC_ABBA_1
0.1111
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Drug responses associated with CEACAM18 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of LIMYMD
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A8MTB9
Carcinoembryonic antigen-related cell adhesion molecule 18
LIG_APCC_ABBA_1
305:310
LIMYMD
APC,CDC20,FZR1
0.9366
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