DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LKPYID
Uniprot ID:
Q9NWK9
Source protein:
Box C/D snoRNA protein 1
Source gene:
ZNHIT6
Class:
LIG_APCC_ABBA_1
Location:
374:379
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5236
ASA_SCORE:
56.3333
COIL:
0.3865
CONS_SCORE:
0.3409
DSS_SCORE:
0.431
HELIX:
0.5938
FCONS_SCORE:
1.0494
RIG_SCORE:
0.806
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S383Y
TCGA-AA-A010
COAD
TCGA
LKPYID
LIG_APCC_ABBA_1
0.2222
p.R388C
TCGA-AP-A1DV
UCEC
TCGA
LKPYID
LIG_APCC_ABBA_1
0.0833
p.R388C
TCGA-BS-A0UV
UCEC
TCGA
LKPYID
LIG_APCC_ABBA_1
0.0833
p.R388C
SIDM00737
Non-Small Cell Lung Carcinoma
GDSC
LKPYID
LIG_APCC_ABBA_1
0.0833
p.R388C
ACH-000904
Lung Cancer
CCLE
LKPYID
LIG_APCC_ABBA_1
0.0833
p.R388C
ACH-001362
Lung Cancer
CCLE
LKPYID
LIG_APCC_ABBA_1
0.0833
p.R388C
NCI-H1770
lung
COSMIC
LKPYID
LIG_APCC_ABBA_1
0.0833
p.D366Y
TCGA-BH-A0HP
BRCA
TCGA
LKPYID
LIG_APCC_ABBA_1
0.1111
p.D367N
TCGA-CF-A47X
BLCA
TCGA
LKPYID
LIG_APCC_ABBA_1
0.1389
p.L387I
DO8730
COAD
ICGC
LKPYID
LIG_APCC_ABBA_1
0.1111
p.P383T
DO228974
LICA
ICGC
LKPYID
LIG_APCC_ABBA_1
0.2222
p.E369Q
DO219221
LUSC
ICGC
LKPYID
LIG_APCC_ABBA_1
0.1944
p.K368Q
SIDM00529
Breast Carcinoma
GDSC
LKPYID
LIG_APCC_ABBA_1
0.6111
p.K368Q
MDA-MB-157
breast
COSMIC
LKPYID
LIG_APCC_ABBA_1
0.6111
p.D367G
SIDM00364
B-Lymphoblastic Leukemia
GDSC
LKPYID
LIG_APCC_ABBA_1
0.1389
p.D367G
P30-OHK
haematopoietic_and_lymphoid_tissue
COSMIC
LKPYID
LIG_APCC_ABBA_1
0.1389
p.P383L
ONS-76
central_nervous_system
COSMIC
LKPYID
LIG_APCC_ABBA_1
0.2222
Drug responses associated with ZNHIT6 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LKPYID
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NWK9
Box C/D snoRNA protein 1
LIG_APCC_ABBA_1
374:379
LKPYID
APC,CDC20,FZR1
0.5236
More...