DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LKVFMD
Uniprot ID:
Q5VWM3
Source protein:
PRAME family member 18
Source gene:
PRAMEF18
Class:
LIG_APCC_ABBA_1
Location:
147:152
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5218
ASA_SCORE:
47.4167
COIL:
0.1768
CONS_SCORE:
0.6689
DSS_SCORE:
0.2157
HELIX:
0.094
FCONS_SCORE:
1.3218
RIG_SCORE:
0.9017
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L147W
SIDM00461
Acute Myeloid Leukemia
GDSC
LKVFMD
LIG_APCC_ABBA_1
0.7015
p.L147W
SIDM00043
Head and Neck Carcinoma
GDSC
LKVFMD
LIG_APCC_ABBA_1
0.7015
p.E157K
SIDM01175
Other Sarcomas
GDSC
LKVFMD
LIG_APCC_ABBA_1
0.1944
p.E157K
SIDM00685
Glioblastoma
GDSC
LKVFMD
LIG_APCC_ABBA_1
0.1944
p.E162K
SIDM00190
Melanoma
GDSC
LKVFMD
LIG_APCC_ABBA_1
0.0556
p.R140K
SIDM00520
Mesothelioma
GDSC
LKVFMD
LIG_APCC_ABBA_1
0.1389
p.D152N
SIDM00126
Melanoma
GDSC
LKVFMD
LIG_APCC_ABBA_1
0.6932
p.K156R
SIDM01147
Gastric Carcinoma
GDSC
LKVFMD
LIG_APCC_ABBA_1
0.3333
p.P146L
SIDM00179
Melanoma
GDSC
LKVFMD
LIG_APCC_ABBA_1
0.3056
p.M160V
SIDM01494
Glioblastoma
GDSC
LKVFMD
LIG_APCC_ABBA_1
0.1111
p.M160V
SIDM01391
Neuroblastoma
GDSC
LKVFMD
LIG_APCC_ABBA_1
0.1111
Drug responses associated with PRAMEF18 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LKVFMD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q5VWM3
PRAME family member 18
LIG_APCC_ABBA_1
147:152
LKVFMD
APC,CDC20,FZR1
0.5218
More...