DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LLLFSD
Uniprot ID:
P12109
Source protein:
Collagen alpha-1
Source gene:
COL6A1
Class:
LIG_APCC_ABBA_1
Location:
939:944
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8204
ASA_SCORE:
7.45
COIL:
0.1067
CONS_SCORE:
0.8701
DSS_SCORE:
0.3308
HELIX:
0.0083
FCONS_SCORE:
1.3864
RIG_SCORE:
0.8007
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G933S
TCGA-B5-A3FC
UCEC
TCGA
LLLFSD
LIG_APCC_ABBA_1
0.1667
p.G933S
DO41871
UCEC
ICGC
LLLFSD
LIG_APCC_ABBA_1
0.1667
p.Q948H
TCGA-CV-7090
HNSC
TCGA
LLLFSD
LIG_APCC_ABBA_1
0.2222
p.Q948H
DO14238
HNSC
ICGC
LLLFSD
LIG_APCC_ABBA_1
0.2222
p.A930V
TCGA-E6-A2P8
UCEC
TCGA
LLLFSD
LIG_APCC_ABBA_1
0.0833
p.A930V
DO40924
UCEC
ICGC
LLLFSD
LIG_APCC_ABBA_1
0.0833
p.A953V
TCGA-EY-A1GF
UCEC
TCGA
LLLFSD
LIG_APCC_ABBA_1
0.0833
p.A953V
DO41704
UCEC
ICGC
LLLFSD
LIG_APCC_ABBA_1
0.0833
p.A930S
DO228952
LICA
ICGC
LLLFSD
LIG_APCC_ABBA_1
0.0833
p.G933V
DO52655
MALY
ICGC
LLLFSD
LIG_APCC_ABBA_1
0.1667
p.A953T
DO224750
PACA
ICGC
LLLFSD
LIG_APCC_ABBA_1
0.0833
p.A953T
SIDM01608
Endometrial Carcinoma
GDSC
LLLFSD
LIG_APCC_ABBA_1
0.0833
p.S947L
SIDM00217
Colorectal Carcinoma
GDSC
LLLFSD
LIG_APCC_ABBA_1
0.25
p.S947L
ACH-000999
Colon/Colorectal Cancer
CCLE
LLLFSD
LIG_APCC_ABBA_1
0.25
p.P952A
SIDM01617
Endometrial Carcinoma
GDSC
LLLFSD
LIG_APCC_ABBA_1
0.1111
p.P952A
ACH-000994
Endometrial/Uterine Cancer
CCLE
LLLFSD
LIG_APCC_ABBA_1
0.1111
p.K937E
SIDM01664
Prostate Carcinoma
GDSC
LLLFSD
LIG_APCC_ABBA_1
0.2778
Drug responses associated with COL6A1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LLLFSD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P12109
Collagen alpha-1
LIG_APCC_ABBA_1
939:944
LLLFSD
APC,CDC20,FZR1
0.8204
More...