DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LLPFVD
Uniprot ID:
Q9H0D6
Source protein:
5'-3' exoribonuclease 2
Source gene:
XRN2
Class:
LIG_APCC_ABBA_1
Location:
649:654
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6553
ASA_SCORE:
35.6667
COIL:
0.7
CONS_SCORE:
0.6534
DSS_SCORE:
0.0578
HELIX:
0.019
FCONS_SCORE:
1.3627
RIG_SCORE:
0.9051
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.F652L
TCGA-EE-A20C
SKCM
TCGA
LLPFVD
LIG_APCC_ABBA_1
0.6981
p.R659Q
TCGA-FD-A43U
BLCA
TCGA
LLPFVD
LIG_APCC_ABBA_1
0.1944
p.K645N
DO229036
LICA
ICGC
LLPFVD
LIG_APCC_ABBA_1
0.2222
p.G644E
DO48884
LUAD
ICGC
LLPFVD
LIG_APCC_ABBA_1
0.1944
p.G641V
DO37543
SKCM
ICGC
LLPFVD
LIG_APCC_ABBA_1
0.5556
p.F646L
DO43306
UCEC
ICGC
LLPFVD
LIG_APCC_ABBA_1
0.25
p.V659I
DO42280
UCEC
ICGC
LLPFVD
LIG_APCC_ABBA_1
0.1944
p.S647Y
DO41488
UCEC
ICGC
LLPFVD
LIG_APCC_ABBA_1
0.2778
p.S647Y
DO41379
UCEC
ICGC
LLPFVD
LIG_APCC_ABBA_1
0.2778
p.K641R
SIDM01043
Other Sarcomas
GDSC
LLPFVD
LIG_APCC_ABBA_1
0.5556
p.K641R
ACH-000913
Endometrial/Uterine Cancer
CCLE
LLPFVD
LIG_APCC_ABBA_1
0.5556
p.K641R
ESS-1
endometrium
COSMIC
LLPFVD
LIG_APCC_ABBA_1
0.5556
p.L649P
SIDM00948
Burkitt's Lymphoma
GDSC
LLPFVD
LIG_APCC_ABBA_1
0.7582
p.L649P
ACH-002232
Lymphoma
CCLE
LLPFVD
LIG_APCC_ABBA_1
0.7582
p.L649P
DG-75
haematopoietic_and_lymphoid_tissue
COSMIC
LLPFVD
LIG_APCC_ABBA_1
0.7582
Drug responses associated with XRN2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LLPFVD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9H0D6
5'-3' exoribonuclease 2
LIG_APCC_ABBA_1
649:654
LLPFVD
APC,CDC20,FZR1
0.6553
More...