DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LLPHFD
Uniprot ID:
Q3L8U1
Source protein:
Chromodomain-helicase-DNA-binding protein 9
Source gene:
CHD9
Class:
LIG_APCC_ABBA_1
Location:
414:419
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7292
ASA_SCORE:
86.7667
COIL:
0.8823
CONS_SCORE:
0.311
DSS_SCORE:
0.5514
HELIX:
0.0763
FCONS_SCORE:
0.9677
RIG_SCORE:
0.7436
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E407K
TCGA-A5-A0G2
UCEC
TCGA
LLPHFD
LIG_APCC_ABBA_1
0.1389
p.E407K
TCGA-AD-6889
COAD
TCGA
LLPHFD
LIG_APCC_ABBA_1
0.1389
p.E407K
TCGA-BR-6802
STAD
TCGA
LLPHFD
LIG_APCC_ABBA_1
0.1389
p.E407K
DO8463
COAD
ICGC
LLPHFD
LIG_APCC_ABBA_1
0.1389
p.E407K
DO38332
STAD
ICGC
LLPHFD
LIG_APCC_ABBA_1
0.1389
p.E407K
DO41235
UCEC
ICGC
LLPHFD
LIG_APCC_ABBA_1
0.1389
p.Q425H
TCGA-AJ-A3EL
UCEC
TCGA
LLPHFD
LIG_APCC_ABBA_1
0.1667
p.Q425H
DO41542
UCEC
ICGC
LLPHFD
LIG_APCC_ABBA_1
0.1667
p.P406L
TCGA-BG-A3EW
UCEC
TCGA
LLPHFD
LIG_APCC_ABBA_1
0.1111
p.P406L
DO48172
UCEC
ICGC
LLPHFD
LIG_APCC_ABBA_1
0.1111
p.L404R
TCGA-CD-A48A
STAD
TCGA
LLPHFD
LIG_APCC_ABBA_1
0.0556
p.L404R
DO47781
STAD
ICGC
LLPHFD
LIG_APCC_ABBA_1
0.0556
p.R407G
OV-17R
ovary
COSMIC
LLPHFD
LIG_APCC_ABBA_1
0.1389
p.K409N
CW-2
large_intestine
COSMIC
LLPHFD
LIG_APCC_ABBA_1
0.1944
Drug responses associated with CHD9 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LLPHFD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q3L8U1
Chromodomain-helicase-DNA-binding protein 9
LIG_APCC_ABBA_1
414:419
LLPHFD
APC,CDC20,FZR1
0.7292
More...