DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LLTPLQS
Uniprot ID:
Q12923
Source protein:
Tyrosine-protein phosphatase non-receptor type 13
Source gene:
PTPN13
Class:
DEG_SCF_FBW7_1
Location:
1600:1606
E3 ligase:
FBXW7
DEGRON score:
0.9939
ASA_SCORE:
76.4571
COIL:
0.853
CONS_SCORE:
0.491
DSS_SCORE:
0.4294
HELIX:
0.1157
FCONS_SCORE:
1.1546
RIG_SCORE:
0.7689
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.I1601M
TCGA-AN-A046
BRCA
TCGA
LLTPLQS
DEG_SCF_FBW7_1
0.7618
p.I1601M
DO1285
BRCA
ICGC
LLTPLQS
DEG_SCF_FBW7_1
0.7618
p.A1613T
TCGA-DA-A95X
SKCM
TCGA
LLTPLQS
DEG_SCF_FBW7_1
0.1389
p.A1613T
DO219480
SKCM
ICGC
LLTPLQS
DEG_SCF_FBW7_1
0.1389
p.S1611Y
DO222884
COCA
ICGC
LLTPLQS
DEG_SCF_FBW7_1
0.1944
p.G1596C
DO50880
LICA
ICGC
LLTPLQS
DEG_SCF_FBW7_1
0.2222
p.N1616D
DO222843
MELA
ICGC
LLTPLQS
DEG_SCF_FBW7_1
0.1667
p.L1597H
DO32337
OV
ICGC
LLTPLQS
DEG_SCF_FBW7_1
0.25
p.P1595L
DO218863
SKCA
ICGC
LLTPLQS
DEG_SCF_FBW7_1
0.1944
p.L1600I
DO37707
SKCM
ICGC
LLTPLQS
DEG_SCF_FBW7_1
0.6063
p.G1615D
DO42280
UCEC
ICGC
LLTPLQS
DEG_SCF_FBW7_1
0.0833
p.P1593S
SIDM00250
Esophageal Squamous Cell Carcinoma
GDSC
LLTPLQS
DEG_SCF_FBW7_1
0.1389
p.P1593S
ACH-000917
Esophageal Cancer
CCLE
LLTPLQS
DEG_SCF_FBW7_1
0.1389
p.P1593S
TE-4
oesophagus
COSMIC
LLTPLQS
DEG_SCF_FBW7_1
0.1389
p.A1613P
SIDM00884
Breast Carcinoma
GDSC
LLTPLQS
DEG_SCF_FBW7_1
0.1389
p.A1613P
HCC1395
breast
COSMIC
LLTPLQS
DEG_SCF_FBW7_1
0.1389
p.T1603A
SIDM01618
B-Lymphoblastic Leukemia
GDSC
LLTPLQS
DEG_SCF_FBW7_1
0.7139
p.T1603A
ACH-000942
Leukemia
CCLE
LLTPLQS
DEG_SCF_FBW7_1
0.7139
p.A1608P
HCC1395
breast
COSMIC
LLTPLQS
DEG_SCF_FBW7_1
0.2778
Drug responses associated with PTPN13 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LLTPLQS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q12923
Tyrosine-protein phosphatase non-receptor type 13
DEG_SCF_FBW7_1
1600:1606
LLTPLQS
FBXW7
0.9939
More...