DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LLYTPLNT
Uniprot ID:
Q86YC2
Source protein:
Partner and localizer of BRCA2
Source gene:
PALB2
Class:
DEG_SCF_FBW7_1
Location:
703:710
E3 ligase:
FBXW7
DEGRON score:
0.589
ASA_SCORE:
94.25
COIL:
0.8565
CONS_SCORE:
0.5465
DSS_SCORE:
0.5027
HELIX:
0.0314
FCONS_SCORE:
1.2573
RIG_SCORE:
0.7573
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A712V
TCGA-06-5416
GBM
TCGA
LLYTPLNT
DEG_SCF_FBW7_1
0.2778
p.A712V
TCGA-XK-AAIW
PRAD
TCGA
LLYTPLNT
DEG_SCF_FBW7_1
0.2778
p.A712V
DO10880
GBM
ICGC
LLYTPLNT
DEG_SCF_FBW7_1
0.2778
p.A712V
DO51407
PRAD
ICGC
LLYTPLNT
DEG_SCF_FBW7_1
0.2778
p.A712V
SIDM01247
Burkitt's Lymphoma
GDSC
LLYTPLNT
DEG_SCF_FBW7_1
0.2778
p.P707S
TCGA-DA-A1HY
SKCM
TCGA
LLYTPLNT
DEG_SCF_FBW7_1
0.6752
p.P707S
DO37409
SKCM
ICGC
LLYTPLNT
DEG_SCF_FBW7_1
0.6752
p.T710M
TCGA-EO-A22R
UCEC
TCGA
LLYTPLNT
DEG_SCF_FBW7_1
0.7423
p.T710M
TCGA-WS-AB45
COAD
TCGA
LLYTPLNT
DEG_SCF_FBW7_1
0.7423
p.T710M
DO51734
COAD
ICGC
LLYTPLNT
DEG_SCF_FBW7_1
0.7423
p.T710M
DO42713
UCEC
ICGC
LLYTPLNT
DEG_SCF_FBW7_1
0.7423
p.D714N
TCGA-XF-A9SP
BLCA
TCGA
LLYTPLNT
DEG_SCF_FBW7_1
0.2222
p.D714N
DO223598
BLCA
ICGC
LLYTPLNT
DEG_SCF_FBW7_1
0.2222
p.T696M
DO233885
GACA
ICGC
LLYTPLNT
DEG_SCF_FBW7_1
0.1389
p.L703V
DO229137
NKTL
ICGC
LLYTPLNT
DEG_SCF_FBW7_1
0.5654
p.T720A
SIDM01064
Hodgkin's Lymphoma
GDSC
LLYTPLNT
DEG_SCF_FBW7_1
0.0556
p.T720A
ACH-000267
Lymphoma
CCLE
LLYTPLNT
DEG_SCF_FBW7_1
0.0556
p.T720A
HDLM-2
haematopoietic_and_lymphoid_tissue
COSMIC
LLYTPLNT
DEG_SCF_FBW7_1
0.0556
p.E695K
C-33-A
cervix
COSMIC
LLYTPLNT
DEG_SCF_FBW7_1
0.2222
p.P713L
NCI-H1770
lung
COSMIC
LLYTPLNT
DEG_SCF_FBW7_1
0.25
Drug responses associated with PALB2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LLYTPLNT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q86YC2
Partner and localizer of BRCA2
DEG_SCF_FBW7_1
703:710
LLYTPLNT
FBXW7
0.589
More...