DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LMTPWEE
Uniprot ID:
Q9NP74
Source protein:
Palmdelphin
Source gene:
PALMD
Class:
DEG_SCF_FBW7_2
Location:
347:353
E3 ligase:
FBXW7
DEGRON score:
0.9882
ASA_SCORE:
82.6
COIL:
0.6926
CONS_SCORE:
0.4448
DSS_SCORE:
0.6435
HELIX:
0.1916
FCONS_SCORE:
1.1174
RIG_SCORE:
0.7019
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P343L
TCGA-43-6770
LUSC
TCGA
LMTPWEE
DEG_SCF_FBW7_2
0.2222
p.P343L
TCGA-EE-A3J7
SKCM
TCGA
LMTPWEE
DEG_SCF_FBW7_2
0.2222
p.P343L
DO27644
LUSC
ICGC
LMTPWEE
DEG_SCF_FBW7_2
0.2222
p.P343L
DO48770
SKCM
ICGC
LMTPWEE
DEG_SCF_FBW7_2
0.2222
p.D361Y
TCGA-AP-A1E0
UCEC
TCGA
LMTPWEE
DEG_SCF_FBW7_2
0.1111
p.D361Y
DO43154
UCEC
ICGC
LMTPWEE
DEG_SCF_FBW7_2
0.1111
p.P350H
TCGA-DA-A1I7
SKCM
TCGA
LMTPWEE
DEG_SCF_FBW7_2
0.7694
p.P350H
DO37951
SKCM
ICGC
LMTPWEE
DEG_SCF_FBW7_2
0.7694
p.R346W
TCGA-G9-6377
PRAD
TCGA
LMTPWEE
DEG_SCF_FBW7_2
0.3056
p.R346W
DO36348
PRAD
ICGC
LMTPWEE
DEG_SCF_FBW7_2
0.3056
p.D361G
DO231690
LINC
ICGC
LMTPWEE
DEG_SCF_FBW7_2
0.1111
p.S354L
DO220889
MELA
ICGC
LMTPWEE
DEG_SCF_FBW7_2
0.3056
p.P350L
DO220886
MELA
ICGC
LMTPWEE
DEG_SCF_FBW7_2
0.7582
p.E352K
SIDM01060
Melanoma
GDSC
LMTPWEE
DEG_SCF_FBW7_2
0.591
p.E352K
ACH-000882
Skin Cancer
CCLE
LMTPWEE
DEG_SCF_FBW7_2
0.591
p.E352K
IGR-1
skin
COSMIC
LMTPWEE
DEG_SCF_FBW7_2
0.591
p.K339E
SIDM00537
Colorectal Carcinoma
GDSC
LMTPWEE
DEG_SCF_FBW7_2
0.5556
p.K339E
ACH-000982
Colon/Colorectal Cancer
CCLE
LMTPWEE
DEG_SCF_FBW7_2
0.5556
p.K339E
ACH-001345
Colon/Colorectal Cancer
CCLE
LMTPWEE
DEG_SCF_FBW7_2
0.5556
p.K339E
GP5d
large_intestine
COSMIC
LMTPWEE
DEG_SCF_FBW7_2
0.5556
p.G339A
CHP-126
autonomic_ganglia
COSMIC
LMTPWEE
DEG_SCF_FBW7_2
0.5556
p.I359N
ARH-77
haematopoietic_and_lymphoid_tissue
COSMIC
LMTPWEE
DEG_SCF_FBW7_2
0.1667
Drug responses associated with PALMD mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LMTPWEE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NP74
Palmdelphin
DEG_SCF_FBW7_2
347:353
LMTPWEE
FBXW7
0.9882
More...