DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
LMVFPE
Uniprot ID:
O00443
Source protein:
Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha
Source gene:
PIK3C2A
Class:
LIG_APCC_ABBA_1
Location:
75:80
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9988
ASA_SCORE:
69.8
COIL:
0.7145
CONS_SCORE:
0.4041
DSS_SCORE:
0.3872
HELIX:
0.1153
FCONS_SCORE:
1.2053
RIG_SCORE:
0.8052
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V77L
TCGA-66-2765
LUSC
TCGA
LMVFPE
LIG_APCC_ABBA_1
0.5654
p.V77L
DO26761
LUSC
ICGC
LMVFPE
LIG_APCC_ABBA_1
0.5654
p.L75F
TCGA-D1-A103
UCEC
TCGA
LMVFPE
LIG_APCC_ABBA_1
0.587
p.L75F
DO42312
UCEC
ICGC
LMVFPE
LIG_APCC_ABBA_1
0.587
p.P79S
TCGA-EB-A1NK
SKCM
TCGA
LMVFPE
LIG_APCC_ABBA_1
0.5641
p.P79S
DO37695
SKCM
ICGC
LMVFPE
LIG_APCC_ABBA_1
0.5641
p.I71V
DO10276
COAD
ICGC
LMVFPE
LIG_APCC_ABBA_1
0.2222
p.W77L
DO37480
SKCM
ICGC
LMVFPE
LIG_APCC_ABBA_1
0.7015
p.D86E
DO51271
SKCM
ICGC
LMVFPE
LIG_APCC_ABBA_1
0.1667
p.E68K
DO51761
STAD
ICGC
LMVFPE
LIG_APCC_ABBA_1
0.5833
p.D81G
DO47973
STAD
ICGC
LMVFPE
LIG_APCC_ABBA_1
0.3056
p.S65Y
DO43154
UCEC
ICGC
LMVFPE
LIG_APCC_ABBA_1
0.0556
p.I70T
DO42745
UCEC
ICGC
LMVFPE
LIG_APCC_ABBA_1
0.3056
p.V77A
SIDM01045
Endometrial Carcinoma
GDSC
LMVFPE
LIG_APCC_ABBA_1
0.6936
p.V77A
ACH-000978
Endometrial/Uterine Cancer
CCLE
LMVFPE
LIG_APCC_ABBA_1
0.6936
p.V77A
EN
endometrium
COSMIC
LMVFPE
LIG_APCC_ABBA_1
0.6936
p.K70N
SIDM00217
Colorectal Carcinoma
GDSC
LMVFPE
LIG_APCC_ABBA_1
0.3056
p.K70N
ACH-000999
Colon/Colorectal Cancer
CCLE
LMVFPE
LIG_APCC_ABBA_1
0.3056
p.K70N
SNU-1040
large_intestine
COSMIC
LMVFPE
LIG_APCC_ABBA_1
0.3056
Drug responses associated with PIK3C2A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LMVFPE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00443
Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha
LIG_APCC_ABBA_1
75:80
LMVFPE
APC,CDC20,FZR1
0.9988
More...