DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LNLFED
Uniprot ID:
Q6WKZ4
Source protein:
Rab11 family-interacting protein 1
Source gene:
RAB11FIP1
Class:
LIG_APCC_ABBA_1
Location:
502:507
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9603
ASA_SCORE:
84.3333
COIL:
0.6185
CONS_SCORE:
0.3945
DSS_SCORE:
0.5584
HELIX:
0.3338
FCONS_SCORE:
1.198
RIG_SCORE:
0.7352
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A492V
TCGA-AB-2828
LAML
TCGA
LNLFED
LIG_APCC_ABBA_1
0.0556
p.Q509L
SIDM01119
Other Solid Cancers
GDSC
LNLFED
LIG_APCC_ABBA_1
0.2778
p.Q509L
ACH-000775
Lung Cancer
CCLE
LNLFED
LIG_APCC_ABBA_1
0.2778
p.Q509L
NCI-H727
lung
COSMIC
LNLFED
LIG_APCC_ABBA_1
0.2778
p.P517R
SIDM00930
Osteosarcoma
GDSC
LNLFED
LIG_APCC_ABBA_1
0.0556
p.P517R
ACH-001715
Bone Cancer
CCLE
LNLFED
LIG_APCC_ABBA_1
0.0556
p.P517R
CAL-72
bone
COSMIC
LNLFED
LIG_APCC_ABBA_1
0.0556
p.A492T
SIDM00217
Colorectal Carcinoma
GDSC
LNLFED
LIG_APCC_ABBA_1
0.0556
p.A492T
ACH-000999
Colon/Colorectal Cancer
CCLE
LNLFED
LIG_APCC_ABBA_1
0.0556
p.A492T
SNU-1040
large_intestine
COSMIC
LNLFED
LIG_APCC_ABBA_1
0.0556
p.E514A
ACH-000389
Brain Cancer
CCLE
LNLFED
LIG_APCC_ABBA_1
0.1389
Drug responses associated with RAB11FIP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LNLFED
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q6WKZ4
Rab11 family-interacting protein 1
LIG_APCC_ABBA_1
502:507
LNLFED
APC,CDC20,FZR1
0.9603
More...