DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LNPFAE
Uniprot ID:
Q92565
Source protein:
Rap guanine nucleotide exchange factor 5
Source gene:
RAPGEF5
Class:
LIG_APCC_ABBA_1
Location:
325:330
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.907
ASA_SCORE:
79.9833
COIL:
0.6538
CONS_SCORE:
0.5069
DSS_SCORE:
0.4338
HELIX:
0.2877
FCONS_SCORE:
1.2903
RIG_SCORE:
0.7844
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S330F
DO24307
LUAD
ICGC
LNPFAE
LIG_APCC_ABBA_1
0.7982
p.K325I
DO51247
SKCM
ICGC
LNPFAE
LIG_APCC_ABBA_1
0.7531
p.F328L
ACH-000994
Endometrial/Uterine Cancer
CCLE
LNPFAE
LIG_APCC_ABBA_1
0.6981
p.D331Y
TCGA-A5-A0G1
UCEC
TCGA
LNPFAE
LIG_APCC_ABBA_1
0.3056
p.T324I
TCGA-B5-A3FA
UCEC
TCGA
LNPFAE
LIG_APCC_ABBA_1
0.3056
p.E331G
DO50936
LICA
ICGC
LNPFAE
LIG_APCC_ABBA_1
0.3056
p.K319N
TCGA-AX-A06F
UCEC
TCGA
LNPFAE
LIG_APCC_ABBA_1
0.2778
p.F319V
DO9474
COAD
ICGC
LNPFAE
LIG_APCC_ABBA_1
0.2778
p.D323E
DO229032
LICA
ICGC
LNPFAE
LIG_APCC_ABBA_1
0.2778
p.D323N
DO37871
SKCM
ICGC
LNPFAE
LIG_APCC_ABBA_1
0.2778
p.D323N
ACH-000582
Skin Cancer
CCLE
LNPFAE
LIG_APCC_ABBA_1
0.2778
p.D323N
COLO-741
large_intestine
COSMIC
LNPFAE
LIG_APCC_ABBA_1
0.2778
p.D323Y
ACH-002193
Lung Cancer
CCLE
LNPFAE
LIG_APCC_ABBA_1
0.2778
p.D323Y
RERF-LC-FM
lung
COSMIC
LNPFAE
LIG_APCC_ABBA_1
0.2778
p.T322M
DO10510
COAD
ICGC
LNPFAE
LIG_APCC_ABBA_1
0.25
p.A322E
DO229031
LICA
ICGC
LNPFAE
LIG_APCC_ABBA_1
0.25
p.E333K
DO222572
MELA
ICGC
LNPFAE
LIG_APCC_ABBA_1
0.25
p.A322V
DO46657
PAAD
ICGC
LNPFAE
LIG_APCC_ABBA_1
0.25
p.Q321L
DO223915
LIHC
ICGC
LNPFAE
LIG_APCC_ABBA_1
0.2222
p.Q321H
ACH-000791
Lung Cancer
CCLE
LNPFAE
LIG_APCC_ABBA_1
0.2222
p.D334N
ACH-001331
Head and Neck Cancer
CCLE
LNPFAE
LIG_APCC_ABBA_1
0.2222
p.D334N
BICR10
upper_aerodigestive_tract
COSMIC
LNPFAE
LIG_APCC_ABBA_1
0.2222
p.L320F
DO23666
LUAD
ICGC
LNPFAE
LIG_APCC_ABBA_1
0.1944
p.D320N
DO47584
SKCM
ICGC
LNPFAE
LIG_APCC_ABBA_1
0.1944
p.D320H
ACH-001459
Colon/Colorectal Cancer
CCLE
LNPFAE
LIG_APCC_ABBA_1
0.1944
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Drug responses associated with RAPGEF5 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of LNPFAE
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q92565
Rap guanine nucleotide exchange factor 5
LIG_APCC_ABBA_1
325:330
LNPFAE
APC,CDC20,FZR1
0.907
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