DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LNTPQDT
Uniprot ID:
Q9UHV7
Source protein:
Mediator of RNA polymerase II transcription subunit 13
Source gene:
MED13
Class:
DEG_SCF_FBW7_1
Location:
1949:1955
E3 ligase:
FBXW7
DEGRON score:
0.6834
ASA_SCORE:
70.7571
COIL:
0.8194
CONS_SCORE:
0.5061
DSS_SCORE:
0.3684
HELIX:
0.1049
FCONS_SCORE:
1.0177
RIG_SCORE:
0.7423
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.C1957G
SIDM00754
Non-Small Cell Lung Carcinoma
GDSC
LNTPQDT
DEG_SCF_FBW7_1
0.2778
p.C1957G
ACH-000379
Lung Cancer
CCLE
LNTPQDT
DEG_SCF_FBW7_1
0.2778
p.C1957G
NCI-H1781
lung
COSMIC
LNTPQDT
DEG_SCF_FBW7_1
0.2778
p.M1944L
TCGA-CV-7435
HNSC
TCGA
LNTPQDT
DEG_SCF_FBW7_1
0.1944
p.M1944L
DO14918
HNSC
ICGC
LNTPQDT
DEG_SCF_FBW7_1
0.1944
p.M1944I
TCGA-DF-A2KN
UCEC
TCGA
LNTPQDT
DEG_SCF_FBW7_1
0.1944
p.M1944I
DO223282
UCEC
ICGC
LNTPQDT
DEG_SCF_FBW7_1
0.1944
p.N1943Y
SIDM01019
Acute Myeloid Leukemia
GDSC
LNTPQDT
DEG_SCF_FBW7_1
0.1667
p.N1943Y
ACH-002258
Leukemia
CCLE
LNTPQDT
DEG_SCF_FBW7_1
0.1667
p.N1943Y
KMOE-2
haematopoietic_and_lymphoid_tissue
COSMIC
LNTPQDT
DEG_SCF_FBW7_1
0.1667
p.F1963S
SIDM00118
Colorectal Carcinoma
GDSC
LNTPQDT
DEG_SCF_FBW7_1
0.1111
p.F1963S
ACH-001081
Colon/Colorectal Cancer
CCLE
LNTPQDT
DEG_SCF_FBW7_1
0.1111
p.F1963S
HCC2998
large_intestine
COSMIC
LNTPQDT
DEG_SCF_FBW7_1
0.1111
p.T1940M
SIDM01090
Colorectal Carcinoma
GDSC
LNTPQDT
DEG_SCF_FBW7_1
0.0833
p.T1940M
ACH-000943
Colon/Colorectal Cancer
CCLE
LNTPQDT
DEG_SCF_FBW7_1
0.0833
p.T1940M
RKO
large_intestine
COSMIC
LNTPQDT
DEG_SCF_FBW7_1
0.0833
p.S1939G
TCGA-UZ-A9PS
KIRP
TCGA
LNTPQDT
DEG_SCF_FBW7_1
0.0556
p.S1939G
DO219709
KIRP
ICGC
LNTPQDT
DEG_SCF_FBW7_1
0.0556
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Drug responses associated with MED13 mutations
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Cancer
Mutation (In Degron?)
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Drug
IC50
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All proteins holding degron of LNTPQDT
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9UHV7
Mediator of RNA polymerase II transcription subunit 13
DEG_SCF_FBW7_1
1949:1955
LNTPQDT
FBXW7
0.6834
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