DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LNTPQDT
Uniprot ID:
Q9UHV7
Source protein:
Mediator of RNA polymerase II transcription subunit 13
Source gene:
MED13
Class:
DEG_SCF_FBW7_1
Location:
1949:1955
E3 ligase:
FBXW7
DEGRON score:
0.6834
ASA_SCORE:
70.7571
COIL:
0.8194
CONS_SCORE:
0.5061
DSS_SCORE:
0.3684
HELIX:
0.1049
FCONS_SCORE:
1.0177
RIG_SCORE:
0.7423
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.M1944L
TCGA-CV-7435
HNSC
TCGA
LNTPQDT
DEG_SCF_FBW7_1
0.1944
p.M1944L
DO14918
HNSC
ICGC
LNTPQDT
DEG_SCF_FBW7_1
0.1944
p.M1944I
TCGA-DF-A2KN
UCEC
TCGA
LNTPQDT
DEG_SCF_FBW7_1
0.1944
p.M1944I
DO223282
UCEC
ICGC
LNTPQDT
DEG_SCF_FBW7_1
0.1944
p.S1939G
TCGA-UZ-A9PS
KIRP
TCGA
LNTPQDT
DEG_SCF_FBW7_1
0.0556
p.S1939G
DO219709
KIRP
ICGC
LNTPQDT
DEG_SCF_FBW7_1
0.0556
p.T1940M
SIDM01090
Colorectal Carcinoma
GDSC
LNTPQDT
DEG_SCF_FBW7_1
0.0833
p.T1940M
ACH-000943
Colon/Colorectal Cancer
CCLE
LNTPQDT
DEG_SCF_FBW7_1
0.0833
p.T1940M
RKO
large_intestine
COSMIC
LNTPQDT
DEG_SCF_FBW7_1
0.0833
p.C1957G
SIDM00754
Non-Small Cell Lung Carcinoma
GDSC
LNTPQDT
DEG_SCF_FBW7_1
0.2778
p.C1957G
ACH-000379
Lung Cancer
CCLE
LNTPQDT
DEG_SCF_FBW7_1
0.2778
p.C1957G
NCI-H1781
lung
COSMIC
LNTPQDT
DEG_SCF_FBW7_1
0.2778
p.N1943Y
SIDM01019
Acute Myeloid Leukemia
GDSC
LNTPQDT
DEG_SCF_FBW7_1
0.1667
p.N1943Y
ACH-002258
Leukemia
CCLE
LNTPQDT
DEG_SCF_FBW7_1
0.1667
p.N1943Y
KMOE-2
haematopoietic_and_lymphoid_tissue
COSMIC
LNTPQDT
DEG_SCF_FBW7_1
0.1667
p.F1963S
SIDM00118
Colorectal Carcinoma
GDSC
LNTPQDT
DEG_SCF_FBW7_1
0.1111
p.F1963S
ACH-001081
Colon/Colorectal Cancer
CCLE
LNTPQDT
DEG_SCF_FBW7_1
0.1111
p.F1963S
HCC2998
large_intestine
COSMIC
LNTPQDT
DEG_SCF_FBW7_1
0.1111
Drug responses associated with MED13 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LNTPQDT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9UHV7
Mediator of RNA polymerase II transcription subunit 13
DEG_SCF_FBW7_1
1949:1955
LNTPQDT
FBXW7
0.6834
More...