DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LNVFAD
Uniprot ID:
Q96FJ0
Source protein:
AMSH-like protease
Source gene:
STAMBPL1
Class:
LIG_APCC_ABBA_1
Location:
223:228
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6791
ASA_SCORE:
55.5333
COIL:
0.5282
CONS_SCORE:
0.4309
DSS_SCORE:
0.4917
HELIX:
0.3523
FCONS_SCORE:
1.1641
RIG_SCORE:
0.7761
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N237D
TCGA-IB-7651
PAAD
TCGA
LNVFAD
LIG_APCC_ABBA_1
0.0833
p.N237D
DO46657
PAAD
ICGC
LNVFAD
LIG_APCC_ABBA_1
0.0833
p.V225A
TCGA-XK-AAIW
PRAD
TCGA
LNVFAD
LIG_APCC_ABBA_1
0.6936
p.V225A
DO51407
PRAD
ICGC
LNVFAD
LIG_APCC_ABBA_1
0.6936
p.N231Y
DO227686
COCA
ICGC
LNVFAD
LIG_APCC_ABBA_1
0.25
p.S233I
DO229009
LICA
ICGC
LNVFAD
LIG_APCC_ABBA_1
0.1944
p.L223P
SIDM00992
Thyroid Gland Carcinoma
GDSC
LNVFAD
LIG_APCC_ABBA_1
0.7582
p.L223P
ACH-000456
Thyroid Cancer
CCLE
LNVFAD
LIG_APCC_ABBA_1
0.7582
p.L223P
BCPAP
thyroid
COSMIC
LNVFAD
LIG_APCC_ABBA_1
0.7582
p.K232Q
SIDM00118
Colorectal Carcinoma
GDSC
LNVFAD
LIG_APCC_ABBA_1
0.3333
p.K232Q
ACH-001081
Colon/Colorectal Cancer
CCLE
LNVFAD
LIG_APCC_ABBA_1
0.3333
p.K232Q
HCC2998
large_intestine
COSMIC
LNVFAD
LIG_APCC_ABBA_1
0.3333
Drug responses associated with STAMBPL1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LNVFAD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q96FJ0
AMSH-like protease
LIG_APCC_ABBA_1
223:228
LNVFAD
APC,CDC20,FZR1
0.6791
More...