DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LNVYKE
Uniprot ID:
Q9NSI6
Source protein:
Bromodomain and WD repeat-containing protein 1
Source gene:
BRWD1
Class:
LIG_APCC_ABBA_1
Location:
2281:2286
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8338
ASA_SCORE:
113.6833
COIL:
0.7813
CONS_SCORE:
0.2244
DSS_SCORE:
0.3571
HELIX:
0.1778
FCONS_SCORE:
0.9842
RIG_SCORE:
0.7745
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E2286K
SIDM00483
Esophageal Carcinoma
GDSC
LNVYKE
LIG_APCC_ABBA_1
0.7022
p.E2286K
ACH-001654
Esophageal Cancer
CCLE
LNVYKE
LIG_APCC_ABBA_1
0.7022
p.E2286K
SK-GT-4
oesophagus
COSMIC
LNVYKE
LIG_APCC_ABBA_1
0.7022
p.S2293F
TCGA-DK-A1A3
BLCA
TCGA
LNVYKE
LIG_APCC_ABBA_1
0.5833
p.S2293F
DO558
BLCA
ICGC
LNVYKE
LIG_APCC_ABBA_1
0.5833
p.D2287A
TCGA-BS-A0UJ
UCEC
TCGA
LNVYKE
LIG_APCC_ABBA_1
0.3056
p.D2287A
DO42745
UCEC
ICGC
LNVYKE
LIG_APCC_ABBA_1
0.3056
p.D2288N
TCGA-BR-4371
STAD
TCGA
LNVYKE
LIG_APCC_ABBA_1
0.2778
p.D2288N
DO38348
STAD
ICGC
LNVYKE
LIG_APCC_ABBA_1
0.2778
p.N2292H
SIDM00193
Colorectal Carcinoma
GDSC
LNVYKE
LIG_APCC_ABBA_1
0.1667
p.N2292H
ACH-000991
Colon/Colorectal Cancer
CCLE
LNVYKE
LIG_APCC_ABBA_1
0.1667
p.N2292H
SNU-81
large_intestine
COSMIC
LNVYKE
LIG_APCC_ABBA_1
0.1667
p.E2294V
TCGA-21-1079
LUSC
TCGA
LNVYKE
LIG_APCC_ABBA_1
0.1111
p.E2294V
DO26846
LUSC
ICGC
LNVYKE
LIG_APCC_ABBA_1
0.1111
p.S2273C
TCGA-60-2698
LUSC
TCGA
LNVYKE
LIG_APCC_ABBA_1
0.1111
p.S2273C
DO26469
LUSC
ICGC
LNVYKE
LIG_APCC_ABBA_1
0.1111
p.S2273Y
TCGA-AG-A002
READ
TCGA
LNVYKE
LIG_APCC_ABBA_1
0.1111
p.S2273Y
TCGA-EO-A22X
UCEC
TCGA
LNVYKE
LIG_APCC_ABBA_1
0.1111
p.S2273Y
DO43907
UCEC
ICGC
LNVYKE
LIG_APCC_ABBA_1
0.1111
p.E2294K
TCGA-DK-A6B6
BLCA
TCGA
LNVYKE
LIG_APCC_ABBA_1
0.1111
p.E2294K
DO48576
BLCA
ICGC
LNVYKE
LIG_APCC_ABBA_1
0.1111
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Drug responses associated with BRWD1 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of LNVYKE
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NSI6
Bromodomain and WD repeat-containing protein 1
LIG_APCC_ABBA_1
2281:2286
LNVYKE
APC,CDC20,FZR1
0.8338
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