DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LPEPTPVK
Uniprot ID:
Q9NRL2
Source protein:
Bromodomain adjacent to zinc finger domain protein 1A
Source gene:
BAZ1A
Class:
DEG_SCF_SKP2-CKS1_1
Location:
410:417
E3 ligase:
SKP2,CSK1
DEGRON score:
0.8114
ASA_SCORE:
76.775
COIL:
0.8914
CONS_SCORE:
0.3939
DSS_SCORE:
0.4816
HELIX:
0.0189
FCONS_SCORE:
0.8286
RIG_SCORE:
0.7259
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D406A
TCGA-D7-A6EY
STAD
TCGA
LPEPTPVK
DEG_SCF_SKP2-CKS1_1
0.2222
p.D406A
DO50118
STAD
ICGC
LPEPTPVK
DEG_SCF_SKP2-CKS1_1
0.2222
p.P411S
TCGA-EE-A29E
SKCM
TCGA
LPEPTPVK
DEG_SCF_SKP2-CKS1_1
0.5641
p.P411S
DO37831
SKCM
ICGC
LPEPTPVK
DEG_SCF_SKP2-CKS1_1
0.5641
p.E412K
TCGA-EY-A2OM
UCEC
TCGA
LPEPTPVK
DEG_SCF_SKP2-CKS1_1
0.7022
p.E412K
DO43025
UCEC
ICGC
LPEPTPVK
DEG_SCF_SKP2-CKS1_1
0.7022
p.P421S
TCGA-G4-6588
COAD
TCGA
LPEPTPVK
DEG_SCF_SKP2-CKS1_1
0.2222
p.P421S
DO10140
COAD
ICGC
LPEPTPVK
DEG_SCF_SKP2-CKS1_1
0.2222
p.T414K
TCGA-HU-A4H4
STAD
TCGA
LPEPTPVK
DEG_SCF_SKP2-CKS1_1
0.7306
p.T414K
DO229037
LICA
ICGC
LPEPTPVK
DEG_SCF_SKP2-CKS1_1
0.7306
p.T414K
DO47721
STAD
ICGC
LPEPTPVK
DEG_SCF_SKP2-CKS1_1
0.7306
p.P413T
DO228985
LICA
ICGC
LPEPTPVK
DEG_SCF_SKP2-CKS1_1
0.5919
Drug responses associated with BAZ1A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LPEPTPVK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NRL2
Bromodomain adjacent to zinc finger domain protein 1A
DEG_SCF_SKP2-CKS1_1
410:417
LPEPTPVK
SKP2,CSK1
0.8114
More...