DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
LPMFRE
Uniprot ID:
Q9NW82
Source protein:
WD repeat-containing protein 70
Source gene:
WDR70
Class:
LIG_APCC_ABBA_1
Location:
536:541
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9955
ASA_SCORE:
67.25
COIL:
0.6927
CONS_SCORE:
0.5005
DSS_SCORE:
0.593
HELIX:
0.2632
FCONS_SCORE:
1.2661
RIG_SCORE:
0.7447
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E541Q
TCGA-77-7337
LUSC
TCGA
LPMFRE
LIG_APCC_ABBA_1
0.6744
p.E541Q
DO27445
LUSC
ICGC
LPMFRE
LIG_APCC_ABBA_1
0.6744
p.T547A
TCGA-D6-A74Q
HNSC
TCGA
LPMFRE
LIG_APCC_ABBA_1
0.1667
p.T547A
DO52087
HNSC
ICGC
LPMFRE
LIG_APCC_ABBA_1
0.1667
p.P542L
TCGA-LN-A4A5
ESCA
TCGA
LPMFRE
LIG_APCC_ABBA_1
0.3056
p.T532I
TCGA-NC-A5HH
LUSC
TCGA
LPMFRE
LIG_APCC_ABBA_1
0.2222
p.T532I
DO219187
LUSC
ICGC
LPMFRE
LIG_APCC_ABBA_1
0.2222
p.R540C
TCGA-ZG-A8QX
PRAD
TCGA
LPMFRE
LIG_APCC_ABBA_1
0.719
p.R540C
DO51448
PRAD
ICGC
LPMFRE
LIG_APCC_ABBA_1
0.719
p.A535V
DO229119
PRAD
ICGC
LPMFRE
LIG_APCC_ABBA_1
0.3056
p.L551V
DO229229
THCA
ICGC
LPMFRE
LIG_APCC_ABBA_1
0.0556
p.R540H
SIDM00373
Endometrial Carcinoma
GDSC
LPMFRE
LIG_APCC_ABBA_1
0.7133
p.R540H
ACH-000974
Endometrial/Uterine Cancer
CCLE
LPMFRE
LIG_APCC_ABBA_1
0.7133
p.R540H
ACH-002026
Endometrial/Uterine Cancer
CCLE
LPMFRE
LIG_APCC_ABBA_1
0.7133
p.R540H
SNG-M
endometrium
COSMIC
LPMFRE
LIG_APCC_ABBA_1
0.7133
p.D528H
SIDM00481
Ovarian Carcinoma
GDSC
LPMFRE
LIG_APCC_ABBA_1
0.1111
p.D528H
ACH-000116
Ovarian Cancer
CCLE
LPMFRE
LIG_APCC_ABBA_1
0.1111
p.D528H
OAW-28
ovary
COSMIC
LPMFRE
LIG_APCC_ABBA_1
0.1111
p.Q527R
SIDM01609
Endometrial Carcinoma
GDSC
LPMFRE
LIG_APCC_ABBA_1
0.0833
p.Q527R
ACH-000972
Endometrial/Uterine Cancer
CCLE
LPMFRE
LIG_APCC_ABBA_1
0.0833
Drug responses associated with WDR70 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LPMFRE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NW82
WD repeat-containing protein 70
LIG_APCC_ABBA_1
536:541
LPMFRE
APC,CDC20,FZR1
0.9955
More...