DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LPNTPPTT
Uniprot ID:
O75096
Source protein:
Low-density lipoprotein receptor-related protein 4
Source gene:
LRP4
Class:
DEG_SCF_FBW7_1
Location:
1671:1678
E3 ligase:
FBXW7
DEGRON score:
0.9659
ASA_SCORE:
76.925
COIL:
0.9018
CONS_SCORE:
0.3377
DSS_SCORE:
0.6505
HELIX:
0.0463
FCONS_SCORE:
1.0147
RIG_SCORE:
0.6496
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N1673S
TCGA-C8-A12P
BRCA
TCGA
LPNTPPTT
DEG_SCF_FBW7_1
0.5958
p.N1673S
DO4000
BRCA
ICGC
LPNTPPTT
DEG_SCF_FBW7_1
0.5958
p.S1681Y
TCGA-D1-A17Q
UCEC
TCGA
LPNTPPTT
DEG_SCF_FBW7_1
0.25
p.S1681Y
DO41903
UCEC
ICGC
LPNTPPTT
DEG_SCF_FBW7_1
0.25
p.R1685W
TCGA-DA-A960
SKCM
TCGA
LPNTPPTT
DEG_SCF_FBW7_1
0.1389
p.R1685W
DO219482
SKCM
ICGC
LPNTPPTT
DEG_SCF_FBW7_1
0.1389
p.R1687H
TCGA-EO-A3B0
UCEC
TCGA
LPNTPPTT
DEG_SCF_FBW7_1
0.0833
p.R1687H
DO219773
UCEC
ICGC
LPNTPPTT
DEG_SCF_FBW7_1
0.0833
p.T1688M
DO52658
MALY
ICGC
LPNTPPTT
DEG_SCF_FBW7_1
0.0556
p.A1661D
SIDM00434
Plasma Cell Myeloma
GDSC
LPNTPPTT
DEG_SCF_FBW7_1
0.0556
p.T1662I
SIDM00750
Non-Small Cell Lung Carcinoma
GDSC
LPNTPPTT
DEG_SCF_FBW7_1
0.0833
p.T1662I
ACH-000869
Lung Cancer
CCLE
LPNTPPTT
DEG_SCF_FBW7_1
0.0833
p.T1662I
NCI-H1568
lung
COSMIC
LPNTPPTT
DEG_SCF_FBW7_1
0.0833
Drug responses associated with LRP4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LPNTPPTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75096
Low-density lipoprotein receptor-related protein 4
DEG_SCF_FBW7_1
1671:1678
LPNTPPTT
FBXW7
0.9659
More...