DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LPPTPSGS
Uniprot ID:
Q6P996
Source protein:
Pyridoxal-dependent decarboxylase domain-containing protein 1
Source gene:
PDXDC1
Class:
DEG_SCF_FBW7_1
Location:
688:695
E3 ligase:
FBXW7
DEGRON score:
0.9859
ASA_SCORE:
86.8625
COIL:
0.9586
CONS_SCORE:
0.3086
DSS_SCORE:
0.6677
HELIX:
0.0136
FCONS_SCORE:
0.758
RIG_SCORE:
0.6343
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S693L
TCGA-58-8387
LUSC
TCGA
LPPTPSGS
DEG_SCF_FBW7_1
0.6556
p.R696H
TCGA-B5-A11E
UCEC
TCGA
LPPTPSGS
DEG_SCF_FBW7_1
0.3056
p.R696H
ACH-000999
Colon/Colorectal Cancer
CCLE
LPPTPSGS
DEG_SCF_FBW7_1
0.3056
p.R696H
SNU-1040
large_intestine
COSMIC
LPPTPSGS
DEG_SCF_FBW7_1
0.3056
p.Q682R
TCGA-CJ-6028
KIRC
TCGA
LPPTPSGS
DEG_SCF_FBW7_1
0.1667
p.K705T
TCGA-E6-A1M0
UCEC
TCGA
LPPTPSGS
DEG_SCF_FBW7_1
0.5
p.T687R
TCGA-XF-A9SZ
BLCA
TCGA
LPPTPSGS
DEG_SCF_FBW7_1
0.75
p.H698D
DO219046
BLCA
ICGC
LPPTPSGS
DEG_SCF_FBW7_1
0.3611
p.D701Y
DO13863
GBM
ICGC
LPPTPSGS
DEG_SCF_FBW7_1
0.1667
p.S691G
DO219717
KIRP
ICGC
LPPTPSGS
DEG_SCF_FBW7_1
0.6993
p.K678N
DO227531
PACA
ICGC
LPPTPSGS
DEG_SCF_FBW7_1
0.0556
p.I699T
DO35606
PBCA
ICGC
LPPTPSGS
DEG_SCF_FBW7_1
0.2222
p.K678T
DO43682
UCEC
ICGC
LPPTPSGS
DEG_SCF_FBW7_1
0.0556
p.L702S
DO41823
UCEC
ICGC
LPPTPSGS
DEG_SCF_FBW7_1
0.1389
p.T687M
SIDM00529
Breast Carcinoma
GDSC
LPPTPSGS
DEG_SCF_FBW7_1
0.75
p.T687M
MDA-MB-157
breast
COSMIC
LPPTPSGS
DEG_SCF_FBW7_1
0.75
p.E705Q
H2803
pleura
COSMIC
LPPTPSGS
DEG_SCF_FBW7_1
0.5
p.E684D
VCaP
prostate
COSMIC
LPPTPSGS
DEG_SCF_FBW7_1
0.2222
p.A685T
HCC1569
breast
COSMIC
LPPTPSGS
DEG_SCF_FBW7_1
0.25
p.T705M
MDA-MB-157
breast
COSMIC
LPPTPSGS
DEG_SCF_FBW7_1
0.5
p.S690T
CL-34
large_intestine
COSMIC
LPPTPSGS
DEG_SCF_FBW7_1
0.7116
p.S691T
CL-34
large_intestine
COSMIC
LPPTPSGS
DEG_SCF_FBW7_1
0.7116
Drug responses associated with PDXDC1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LPPTPSGS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q6P996
Pyridoxal-dependent decarboxylase domain-containing protein 1
DEG_SCF_FBW7_1
688:695
LPPTPSGS
FBXW7
0.9859
More...