DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LPQTPLDT
Uniprot ID:
Q7LBC6
Source protein:
Lysine-specific demethylase 3B
Source gene:
KDM3B
Class:
DEG_SCF_FBW7_1
Location:
1304:1311
E3 ligase:
FBXW7
DEGRON score:
0.9686
ASA_SCORE:
82.275
COIL:
0.8656
CONS_SCORE:
0.4709
DSS_SCORE:
0.5611
HELIX:
0.0573
FCONS_SCORE:
0.929
RIG_SCORE:
0.6695
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D1310G
TCGA-AA-A010
COAD
TCGA
LPQTPLDT
DEG_SCF_FBW7_1
0.6087
p.D1310G
TCGA-AX-A2HC
UCEC
TCGA
LPQTPLDT
DEG_SCF_FBW7_1
0.6087
p.L1304H
TCGA-AD-6895
COAD
TCGA
LPQTPLDT
DEG_SCF_FBW7_1
0.7313
p.L1296I
TCGA-AP-A059
UCEC
TCGA
LPQTPLDT
DEG_SCF_FBW7_1
0.1111
p.R1294Q
TCGA-AP-A0LM
UCEC
TCGA
LPQTPLDT
DEG_SCF_FBW7_1
0.0556
p.P1314L
TCGA-EE-A3AG
SKCM
TCGA
LPQTPLDT
DEG_SCF_FBW7_1
0.25
p.R1315H
DO5242
BRCA
ICGC
LPQTPLDT
DEG_SCF_FBW7_1
0.2222
p.R1315H
DO44442
HNSC
ICGC
LPQTPLDT
DEG_SCF_FBW7_1
0.2222
p.E1295D
DO8898
COAD
ICGC
LPQTPLDT
DEG_SCF_FBW7_1
0.0833
p.D1301V
DO23232
LINC
ICGC
LPQTPLDT
DEG_SCF_FBW7_1
0.25
p.R1315C
DO222557
MELA
ICGC
LPQTPLDT
DEG_SCF_FBW7_1
0.2222
p.P1316L
SIDM00458
Acute Myeloid Leukemia
GDSC
LPQTPLDT
DEG_SCF_FBW7_1
0.1944
p.P1316L
ACH-000751
Leukemia
CCLE
LPQTPLDT
DEG_SCF_FBW7_1
0.1944
p.P1316L
OCI-M1
haematopoietic_and_lymphoid_tissue
COSMIC
LPQTPLDT
DEG_SCF_FBW7_1
0.1944
p.H1298Y
SIDM00608
Plasma Cell Myeloma
GDSC
LPQTPLDT
DEG_SCF_FBW7_1
0.1667
p.H1298Y
ACH-000714
Myeloma
CCLE
LPQTPLDT
DEG_SCF_FBW7_1
0.1667
p.H1298Y
KMS-11
haematopoietic_and_lymphoid_tissue
COSMIC
LPQTPLDT
DEG_SCF_FBW7_1
0.1667
p.G1300V
SIDM00094
Kidney Carcinoma
GDSC
LPQTPLDT
DEG_SCF_FBW7_1
0.2222
p.G1300V
ACH-002199
Kidney Cancer
CCLE
LPQTPLDT
DEG_SCF_FBW7_1
0.2222
p.G1300V
SN12C
kidney
COSMIC
LPQTPLDT
DEG_SCF_FBW7_1
0.2222
Drug responses associated with KDM3B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LPQTPLDT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q7LBC6
Lysine-specific demethylase 3B
DEG_SCF_FBW7_1
1304:1311
LPQTPLDT
FBXW7
0.9686
More...