DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LPTPGPT
Uniprot ID:
Q9P2R6
Source protein:
Arginine-glutamic acid dipeptide repeats protein
Source gene:
RERE
Class:
DEG_SCF_FBW7_1
Location:
761:767
E3 ligase:
FBXW7
DEGRON score:
0.7558
ASA_SCORE:
88.3286
COIL:
0.9764
CONS_SCORE:
0.4466
DSS_SCORE:
0.8509
HELIX:
0.0083
FCONS_SCORE:
1.0206
RIG_SCORE:
0.4929
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A770V
TCGA-CN-5369
HNSC
TCGA
LPTPGPT
DEG_SCF_FBW7_1
0.25
p.A770V
DO16069
HNSC
ICGC
LPTPGPT
DEG_SCF_FBW7_1
0.25
p.G757E
TCGA-GN-A4U3
SKCM
TCGA
LPTPGPT
DEG_SCF_FBW7_1
0.2222
p.G757E
DO219484
SKCM
ICGC
LPTPGPT
DEG_SCF_FBW7_1
0.2222
p.P766L
TCGA-IB-AAUU
PAAD
TCGA
LPTPGPT
DEG_SCF_FBW7_1
0.6471
p.P766L
DO51712
PAAD
ICGC
LPTPGPT
DEG_SCF_FBW7_1
0.6471
p.A772T
DO229253
THCA
ICGC
LPTPGPT
DEG_SCF_FBW7_1
0.1944
p.P774S
ACH-000894
Lung Cancer
CCLE
LPTPGPT
DEG_SCF_FBW7_1
0.1389
p.G757A
ACH-001795
Liposarcoma
CCLE
LPTPGPT
DEG_SCF_FBW7_1
0.2222
p.R763Q
NCI-H1155
lung
COSMIC
LPTPGPT
DEG_SCF_FBW7_1
0.7329
Drug responses associated with RERE mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LPTPGPT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9P2R6
Arginine-glutamic acid dipeptide repeats protein
DEG_SCF_FBW7_1
761:767
LPTPGPT
FBXW7
0.7558
More...