DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LPVFDE
Uniprot ID:
Q9NYL9
Source protein:
Tropomodulin-3
Source gene:
TMOD3
Class:
LIG_APCC_ABBA_1
Location:
174:179
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.975
ASA_SCORE:
49.0167
COIL:
0.7227
CONS_SCORE:
0.6942
DSS_SCORE:
0.5223
HELIX:
0.0438
FCONS_SCORE:
0.9582
RIG_SCORE:
0.7621
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V176I
TCGA-CI-6622
READ
TCGA
LPVFDE
LIG_APCC_ABBA_1
0.5965
p.V176I
DO36435
READ
ICGC
LPVFDE
LIG_APCC_ABBA_1
0.5965
p.E187Q
TCGA-DK-A6B6
BLCA
TCGA
LPVFDE
LIG_APCC_ABBA_1
0.1111
p.E187Q
DO48576
BLCA
ICGC
LPVFDE
LIG_APCC_ABBA_1
0.1111
p.F164L
TCGA-DU-6392
LGG
TCGA
LPVFDE
LIG_APCC_ABBA_1
0.0556
p.F164L
DO22237
LGG
ICGC
LPVFDE
LIG_APCC_ABBA_1
0.0556
p.V186E
DO228976
LICA
ICGC
LPVFDE
LIG_APCC_ABBA_1
0.1389
p.S189I
DO229006
LICA
ICGC
LPVFDE
LIG_APCC_ABBA_1
0.0556
p.P175S
DO220886
MELA
ICGC
LPVFDE
LIG_APCC_ABBA_1
0.5641
p.D178V
SIDM00345
Non-Small Cell Lung Carcinoma
GDSC
LPVFDE
LIG_APCC_ABBA_1
0.6674
p.D178V
ACH-000627
Lung Cancer
CCLE
LPVFDE
LIG_APCC_ABBA_1
0.6674
p.D178V
LCLC-103H
lung
COSMIC
LPVFDE
LIG_APCC_ABBA_1
0.6674
p.T184A
ACH-000044
Breast Cancer
CCLE
LPVFDE
LIG_APCC_ABBA_1
0.1944
Drug responses associated with TMOD3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LPVFDE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NYL9
Tropomodulin-3
LIG_APCC_ABBA_1
174:179
LPVFDE
APC,CDC20,FZR1
0.975
More...