DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LPVFQD
Uniprot ID:
Q4G0X9
Source protein:
Coiled-coil domain-containing protein 40
Source gene:
CCDC40
Class:
LIG_APCC_ABBA_1
Location:
241:246
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.796
ASA_SCORE:
85.8333
COIL:
0.6703
CONS_SCORE:
0.2897
DSS_SCORE:
0.8399
HELIX:
0.2978
FCONS_SCORE:
1.0915
RIG_SCORE:
0.7372
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G239E
TCGA-DS-A1OB
CESC
TCGA
LPVFQD
LIG_APCC_ABBA_1
0.2778
p.G239E
DO6323
CESC
ICGC
LPVFQD
LIG_APCC_ABBA_1
0.2778
p.A234V
TCGA-W3-AA1R
SKCM
TCGA
LPVFQD
LIG_APCC_ABBA_1
0.1389
p.A234V
DO51275
SKCM
ICGC
LPVFQD
LIG_APCC_ABBA_1
0.1389
p.F244I
TCGA-Z2-A8RT
SKCM
TCGA
LPVFQD
LIG_APCC_ABBA_1
0.7415
p.F244I
DO51301
SKCM
ICGC
LPVFQD
LIG_APCC_ABBA_1
0.7415
p.E255K
DO222843
MELA
ICGC
LPVFQD
LIG_APCC_ABBA_1
0.0833
p.H235P
DO229253
THCA
ICGC
LPVFQD
LIG_APCC_ABBA_1
0.1667
p.D233N
SIDM00941
Kidney Carcinoma
GDSC
LPVFQD
LIG_APCC_ABBA_1
0.1111
p.D233N
SIDM00651
Non-Small Cell Lung Carcinoma
GDSC
LPVFQD
LIG_APCC_ABBA_1
0.1111
Drug responses associated with CCDC40 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LPVFQD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q4G0X9
Coiled-coil domain-containing protein 40
LIG_APCC_ABBA_1
241:246
LPVFQD
APC,CDC20,FZR1
0.796
More...