DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LRCVLSSVA
Uniprot ID:
Q5VST9
Source protein:
Obscurin
Source gene:
OBSCN
Class:
DEG_APCC_DBOX_1
Location:
3204:3212
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8
ASA_SCORE:
52.2
COIL:
0.4217
CONS_SCORE:
0.5804
DSS_SCORE:
0.0472
HELIX:
0.0053
FCONS_SCORE:
1.3348
RIG_SCORE:
0.8745
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P3196Q
TCGA-EE-A29E
SKCM
TCGA
LRCVLSSVA
DEG_APCC_DBOX_1
0.1111
p.P3196Q
DO37831
SKCM
ICGC
LRCVLSSVA
DEG_APCC_DBOX_1
0.1111
p.D3195N
TCGA-FW-A3R5
SKCM
TCGA
LRCVLSSVA
DEG_APCC_DBOX_1
0.0833
p.D3195N
DO37406
SKCM
ICGC
LRCVLSSVA
DEG_APCC_DBOX_1
0.0833
p.P3196S
TCGA-GN-A8LK
SKCM
TCGA
LRCVLSSVA
DEG_APCC_DBOX_1
0.1111
p.P3196S
DO51259
SKCM
ICGC
LRCVLSSVA
DEG_APCC_DBOX_1
0.1111
p.P3196L
TCGA-GN-A8LK
SKCM
TCGA
LRCVLSSVA
DEG_APCC_DBOX_1
0.1111
p.P3196L
DO51259
SKCM
ICGC
LRCVLSSVA
DEG_APCC_DBOX_1
0.1111
p.Q3213H
TCGA-OR-A5KB
ACC
TCGA
LRCVLSSVA
DEG_APCC_DBOX_1
0.3056
p.R3211C
DO225226
BRCA
ICGC
LRCVLSSVA
DEG_APCC_DBOX_1
0.8301
p.R3211C
DO233888
GACA
ICGC
LRCVLSSVA
DEG_APCC_DBOX_1
0.8301
p.S3208T
DO225448
GACA
ICGC
LRCVLSSVA
DEG_APCC_DBOX_1
0.7116
p.A3197S
DO229027
LICA
ICGC
LRCVLSSVA
DEG_APCC_DBOX_1
0.1389
p.G3202S
DO232761
PBCA
ICGC
LRCVLSSVA
DEG_APCC_DBOX_1
0.2778
p.G3202S
ACH-001377
Pancreatic Cancer
CCLE
LRCVLSSVA
DEG_APCC_DBOX_1
0.2778
p.R3216C
DO43763
UCEC
ICGC
LRCVLSSVA
DEG_APCC_DBOX_1
0.3333
p.R3216C
SIDM00451
T-Lymphoblastic Leukemia
GDSC
LRCVLSSVA
DEG_APCC_DBOX_1
0.3333
p.R3216C
ACH-000937
Leukemia
CCLE
LRCVLSSVA
DEG_APCC_DBOX_1
0.3333
p.R3216C
PF-382
haematopoietic_and_lymphoid_tissue
COSMIC
LRCVLSSVA
DEG_APCC_DBOX_1
0.3333
p.S3210N
SIDM00150
Colorectal Carcinoma
GDSC
LRCVLSSVA
DEG_APCC_DBOX_1
0.5958
p.S3210N
ACH-000969
Colon/Colorectal Cancer
CCLE
LRCVLSSVA
DEG_APCC_DBOX_1
0.5958
p.S3210N
KM12
large_intestine
COSMIC
LRCVLSSVA
DEG_APCC_DBOX_1
0.5958
p.S3208G
ACH-001610
Brain Cancer
CCLE
LRCVLSSVA
DEG_APCC_DBOX_1
0.6993
p.V3215M
SNG-M
endometrium
COSMIC
LRCVLSSVA
DEG_APCC_DBOX_1
0.25
Drug responses associated with OBSCN mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LRCVLSSVA
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q5VST9
Obscurin
DEG_APCC_DBOX_1
3204:3212
LRCVLSSVA
APC,CDC20,FZR1
0.8
More...