DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LRGRLARLE
Uniprot ID:
A6NC98
Source protein:
Coiled-coil domain-containing protein 88B
Source gene:
CCDC88B
Class:
DEG_APCC_DBOX_1
Location:
1189:1197
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8373
ASA_SCORE:
105.4667
COIL:
0.0324
CONS_SCORE:
0.598
DSS_SCORE:
0.3602
HELIX:
0.9699
FCONS_SCORE:
1.2502
RIG_SCORE:
0.7552
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G1184D
TCGA-BF-A5ER
SKCM
TCGA
LRGRLARLE
DEG_APCC_DBOX_1
0.1944
p.G1184D
TCGA-D9-A1JW
SKCM
TCGA
LRGRLARLE
DEG_APCC_DBOX_1
0.1944
p.G1184D
DO37786
SKCM
ICGC
LRGRLARLE
DEG_APCC_DBOX_1
0.1944
p.G1184D
DO219454
SKCM
ICGC
LRGRLARLE
DEG_APCC_DBOX_1
0.1944
p.Q1183H
TCGA-CA-5797
COAD
TCGA
LRGRLARLE
DEG_APCC_DBOX_1
0.1667
p.R1179W
TCGA-CG-5721
STAD
TCGA
LRGRLARLE
DEG_APCC_DBOX_1
0.0556
p.R1179W
DO38192
STAD
ICGC
LRGRLARLE
DEG_APCC_DBOX_1
0.0556
p.R1179Q
TCGA-EO-A22U
UCEC
TCGA
LRGRLARLE
DEG_APCC_DBOX_1
0.0556
p.R1179Q
DO43755
UCEC
ICGC
LRGRLARLE
DEG_APCC_DBOX_1
0.0556
p.R1186H
TCGA-GS-A9TQ
DLBC
TCGA
LRGRLARLE
DEG_APCC_DBOX_1
0.25
p.R1186H
DO230326
COCA
ICGC
LRGRLARLE
DEG_APCC_DBOX_1
0.25
p.R1186H
DO219911
DLBC
ICGC
LRGRLARLE
DEG_APCC_DBOX_1
0.25
p.R1195W
DO234345
ESAD
ICGC
LRGRLARLE
DEG_APCC_DBOX_1
0.7523
p.R1192L
DO229018
LICA
ICGC
LRGRLARLE
DEG_APCC_DBOX_1
0.7316
p.G1180C
DO229028
LICA
ICGC
LRGRLARLE
DEG_APCC_DBOX_1
0.0833
p.E1197D
DO229041
LICA
ICGC
LRGRLARLE
DEG_APCC_DBOX_1
0.5647
p.L1198M
DO229242
THCA
ICGC
LRGRLARLE
DEG_APCC_DBOX_1
0.3056
p.A1201V
SIDM01729
Endometrial Carcinoma
GDSC
LRGRLARLE
DEG_APCC_DBOX_1
0.2222
p.A1201V
ACH-000909
Endometrial/Uterine Cancer
CCLE
LRGRLARLE
DEG_APCC_DBOX_1
0.2222
Drug responses associated with CCDC88B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LRGRLARLE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6NC98
Coiled-coil domain-containing protein 88B
DEG_APCC_DBOX_1
1189:1197
LRGRLARLE
APC,CDC20,FZR1
0.8373
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