DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LRKTPVSE
Uniprot ID:
Q92540
Source protein:
Nonsense-mediated mRNA decay factor SMG7
Source gene:
SMG7
Class:
DEG_SCF_FBW7_2
Location:
621:628
E3 ligase:
FBXW7
DEGRON score:
0.9983
ASA_SCORE:
100.7375
COIL:
0.7839
CONS_SCORE:
0.3577
DSS_SCORE:
0.5933
HELIX:
0.1834
FCONS_SCORE:
1.0839
RIG_SCORE:
0.7147
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T622S
TCGA-21-1078
LUSC
TCGA
LRKTPVSE
DEG_SCF_FBW7_2
0.7116
p.G634V
TCGA-95-7039
LUAD
TCGA
LRKTPVSE
DEG_SCF_FBW7_2
0.1667
p.P619L
TCGA-AA-3864
COAD
TCGA
LRKTPVSE
DEG_SCF_FBW7_2
0.2778
p.P613S
TCGA-DY-A1DG
READ
TCGA
LRKTPVSE
DEG_SCF_FBW7_2
0.1111
p.Q628H
DO229031
LICA
ICGC
LRKTPVSE
DEG_SCF_FBW7_2
0.7582
p.T618I
DO46657
PAAD
ICGC
LRKTPVSE
DEG_SCF_FBW7_2
0.25
p.P621T
DO37738
SKCM
ICGC
LRKTPVSE
DEG_SCF_FBW7_2
0.7031
p.H633Y
DO219501
SKCM
ICGC
LRKTPVSE
DEG_SCF_FBW7_2
0.1944
p.T620S
DO41608
UCEC
ICGC
LRKTPVSE
DEG_SCF_FBW7_2
0.3056
p.A624T
DO41791
UCEC
ICGC
LRKTPVSE
DEG_SCF_FBW7_2
0.7139
p.P631L
CP66-MEL
skin
COSMIC
LRKTPVSE
DEG_SCF_FBW7_2
0.3611
Drug responses associated with SMG7 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LRKTPVSE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q92540
Nonsense-mediated mRNA decay factor SMG7
DEG_SCF_FBW7_2
621:628
LRKTPVSE
FBXW7
0.9983
More...