DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
LRLFGD
Uniprot ID:
Q9UBK2
Source protein:
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha
Source gene:
PPARGC1A
Class:
LIG_APCC_ABBA_1
Location:
378:383
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6648
ASA_SCORE:
72
COIL:
0.5928
CONS_SCORE:
0.6607
DSS_SCORE:
0.4152
HELIX:
0.1763
FCONS_SCORE:
1.1599
RIG_SCORE:
0.737
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R375W
TCGA-A6-3809
COAD
TCGA
LRLFGD
LIG_APCC_ABBA_1
0.25
p.R375W
TCGA-AA-3715
COAD
TCGA
LRLFGD
LIG_APCC_ABBA_1
0.25
p.R375W
DO8018
COAD
ICGC
LRLFGD
LIG_APCC_ABBA_1
0.25
p.R375W
DO8722
COAD
ICGC
LRLFGD
LIG_APCC_ABBA_1
0.25
p.R371S
TCGA-A6-6782
COAD
TCGA
LRLFGD
LIG_APCC_ABBA_1
0.1389
p.R371S
DO10534
COAD
ICGC
LRLFGD
LIG_APCC_ABBA_1
0.1389
p.R371M
TCGA-B5-A3FA
UCEC
TCGA
LRLFGD
LIG_APCC_ABBA_1
0.1389
p.R371M
DO52402
UCEC
ICGC
LRLFGD
LIG_APCC_ABBA_1
0.1389
p.G382A
TCGA-BS-A0UM
UCEC
TCGA
LRLFGD
LIG_APCC_ABBA_1
0.6429
p.G382A
DO43065
UCEC
ICGC
LRLFGD
LIG_APCC_ABBA_1
0.6429
p.S392F
TCGA-ER-A42L
SKCM
TCGA
LRLFGD
LIG_APCC_ABBA_1
0.0833
p.S392F
DO223910
SKCM
ICGC
LRLFGD
LIG_APCC_ABBA_1
0.0833
p.R375Q
TCGA-M7-A721
PRAD
TCGA
LRLFGD
LIG_APCC_ABBA_1
0.25
p.R375Q
DO48614
PRAD
ICGC
LRLFGD
LIG_APCC_ABBA_1
0.25
p.E370K
DO229446
SKCA
ICGC
LRLFGD
LIG_APCC_ABBA_1
0.1111
p.H368Y
SIDM00151
Ovarian Carcinoma
GDSC
LRLFGD
LIG_APCC_ABBA_1
0.0556
p.H368Y
ACH-000966
Ovarian Cancer
CCLE
LRLFGD
LIG_APCC_ABBA_1
0.0556
p.H368Y
IGROV-1
ovary
COSMIC
LRLFGD
LIG_APCC_ABBA_1
0.0556
p.G382R
SIDM00939
Non-Small Cell Lung Carcinoma
GDSC
LRLFGD
LIG_APCC_ABBA_1
0.6457
p.G382R
ACH-000826
Lung Cancer
CCLE
LRLFGD
LIG_APCC_ABBA_1
0.6457
p.G382R
CAL-12T
lung
COSMIC
LRLFGD
LIG_APCC_ABBA_1
0.6457
p.H384Y
ACH-001982
Metastasis
CCLE
LRLFGD
LIG_APCC_ABBA_1
0.3056
Drug responses associated with PPARGC1A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LRLFGD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9UBK2
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha
LIG_APCC_ABBA_1
378:383
LRLFGD
APC,CDC20,FZR1
0.6648
More...