DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
LRLFRE
Uniprot ID:
P12644
Source protein:
Bone morphogenetic protein 4
Source gene:
BMP4
Class:
LIG_APCC_ABBA_1
Location:
158:163
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6225
ASA_SCORE:
27.8667
COIL:
0.0988
CONS_SCORE:
0.632
DSS_SCORE:
0.2828
HELIX:
0.0112
FCONS_SCORE:
1.34
RIG_SCORE:
0.8395
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R162W
TCGA-2W-A8YY
CESC
TCGA
LRLFRE
LIG_APCC_ABBA_1
0.7523
p.R162W
DO223732
CESC
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.7523
p.S155A
TCGA-39-5022
LUSC
TCGA
LRLFRE
LIG_APCC_ABBA_1
0.25
p.S155A
DO27604
LUSC
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.25
p.D166Y
TCGA-56-8504
LUSC
TCGA
LRLFRE
LIG_APCC_ABBA_1
0.25
p.D166Y
DO45437
LUSC
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.25
p.Q164H
TCGA-56-8629
LUSC
TCGA
LRLFRE
LIG_APCC_ABBA_1
0.3056
p.Q164H
DO45451
LUSC
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.3056
p.G168D
TCGA-DI-A1BU
UCEC
TCGA
LRLFRE
LIG_APCC_ABBA_1
0.1944
p.G168D
DO42023
UCEC
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.1944
p.R159Q
TCGA-EO-A22T
UCEC
TCGA
LRLFRE
LIG_APCC_ABBA_1
0.6218
p.R159Q
DO42320
UCEC
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.6218
p.S155Y
TCGA-GN-A265
SKCM
TCGA
LRLFRE
LIG_APCC_ABBA_1
0.25
p.S155Y
DO37491
SKCM
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.25
p.E151K
TCGA-GN-A4U4
SKCM
TCGA
LRLFRE
LIG_APCC_ABBA_1
0.1389
p.E151K
DO51256
SKCM
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.1389
p.S155C
TCGA-IR-A3LL
CESC
TCGA
LRLFRE
LIG_APCC_ABBA_1
0.25
p.S155C
DO44362
CESC
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.25
p.V152A
DO228483
BRCA
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.1667
p.V152A
DO230334
COCA
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.1667
p.V152A
DO229013
COCA
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.1667
p.V152A
DO229003
COCA
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.1667
p.V152A
DO229505
LAML
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.1667
p.V152A
DO228947
LICA
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.1667
p.I153T
DO229211
THCA
ICGC
LRLFRE
LIG_APCC_ABBA_1
0.1944
p.E149Q
SIDM01048
Plasma Cell Myeloma
GDSC
LRLFRE
LIG_APCC_ABBA_1
0.0833
p.E149Q
ACH-000821
Myeloma
CCLE
LRLFRE
LIG_APCC_ABBA_1
0.0833
p.E149Q
EJM
haematopoietic_and_lymphoid_tissue
COSMIC
LRLFRE
LIG_APCC_ABBA_1
0.0833
p.E172K
SIDM00411
Pancreatic Carcinoma
GDSC
LRLFRE
LIG_APCC_ABBA_1
0.0833
p.E172K
ACH-000332
Pancreatic Cancer
CCLE
LRLFRE
LIG_APCC_ABBA_1
0.0833
p.E172K
YAPC
pancreas
COSMIC
LRLFRE
LIG_APCC_ABBA_1
0.0833
p.S154F
SIDM00142
Endometrial Carcinoma
GDSC
LRLFRE
LIG_APCC_ABBA_1
0.2222
p.S154F
ACH-000864
Endometrial/Uterine Cancer
CCLE
LRLFRE
LIG_APCC_ABBA_1
0.2222
p.S154F
ACH-001283
Bone Cancer
CCLE
LRLFRE
LIG_APCC_ABBA_1
0.2222
p.S154F
COLO-684
endometrium
COSMIC
LRLFRE
LIG_APCC_ABBA_1
0.2222
p.R162Q
SIDM01445
Gastric Carcinoma
GDSC
LRLFRE
LIG_APCC_ABBA_1
0.6218
p.V165L
ACH-000435
Endometrial/Uterine Cancer
CCLE
LRLFRE
LIG_APCC_ABBA_1
0.2778
Drug responses associated with BMP4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LRLFRE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P12644
Bone morphogenetic protein 4
LIG_APCC_ABBA_1
158:163
LRLFRE
APC,CDC20,FZR1
0.6225
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