DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LRPFGD
Uniprot ID:
Q9H4Q3
Source protein:
PR domain zinc finger protein 13
Source gene:
PRDM13
Class:
LIG_APCC_ABBA_1
Location:
607:612
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7685
ASA_SCORE:
74.25
COIL:
0.8077
CONS_SCORE:
0.72
DSS_SCORE:
0.1538
HELIX:
0.0052
FCONS_SCORE:
0.9765
RIG_SCORE:
0.7768
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D612Y
DO228976
LICA
ICGC
LRPFGD
LIG_APCC_ABBA_1
0.7325
p.D612G
TCGA-CG-5721
STAD
TCGA
LRPFGD
LIG_APCC_ABBA_1
0.7198
p.D612G
DO38192
STAD
ICGC
LRPFGD
LIG_APCC_ABBA_1
0.7198
p.F610L
TCGA-60-2698
LUSC
TCGA
LRPFGD
LIG_APCC_ABBA_1
0.6981
p.F610L
DO228460
BRCA
ICGC
LRPFGD
LIG_APCC_ABBA_1
0.6981
p.F610L
DO26469
LUSC
ICGC
LRPFGD
LIG_APCC_ABBA_1
0.6981
p.D612N
DO234378
ESAD
ICGC
LRPFGD
LIG_APCC_ABBA_1
0.6932
p.L607M
TCGA-06-5416
GBM
TCGA
LRPFGD
LIG_APCC_ABBA_1
0.5999
p.L607M
DO10880
GBM
ICGC
LRPFGD
LIG_APCC_ABBA_1
0.5999
p.C606F
DO229034
LICA
ICGC
LRPFGD
LIG_APCC_ABBA_1
0.3056
p.K599T
TCGA-AJ-A5DW
UCEC
TCGA
LRPFGD
LIG_APCC_ABBA_1
0.2222
p.K599T
DO50075
UCEC
ICGC
LRPFGD
LIG_APCC_ABBA_1
0.2222
p.L616P
DO234457
ESAD
ICGC
LRPFGD
LIG_APCC_ABBA_1
0.2222
p.P600L
SIDM01148
Plasma Cell Myeloma
GDSC
LRPFGD
LIG_APCC_ABBA_1
0.1389
p.P600L
ACH-000050
Myeloma
CCLE
LRPFGD
LIG_APCC_ABBA_1
0.1389
p.P600L
NCI-H929
haematopoietic_and_lymphoid_tissue
COSMIC
LRPFGD
LIG_APCC_ABBA_1
0.1389
p.R621W
DO233867
GACA
ICGC
LRPFGD
LIG_APCC_ABBA_1
0.0833
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Drug responses associated with PRDM13 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of LRPFGD
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9H4Q3
PR domain zinc finger protein 13
LIG_APCC_ABBA_1
607:612
LRPFGD
APC,CDC20,FZR1
0.7685
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