DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LRQRLKDLE
Uniprot ID:
Q5VTR2
Source protein:
E3 ubiquitin-protein ligase BRE1A
Source gene:
RNF20
Class:
DEG_APCC_DBOX_1
Location:
677:685
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5126
ASA_SCORE:
101.5
COIL:
0.0129
CONS_SCORE:
0.4427
DSS_SCORE:
0.4873
HELIX:
0.9877
FCONS_SCORE:
1.1491
RIG_SCORE:
0.7479
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K689N
TCGA-AX-A05Z
UCEC
TCGA
LRQRLKDLE
DEG_APCC_DBOX_1
0.3333
p.K689N
TCGA-EO-A22U
UCEC
TCGA
LRQRLKDLE
DEG_APCC_DBOX_1
0.3333
p.K689N
DO40884
UCEC
ICGC
LRQRLKDLE
DEG_APCC_DBOX_1
0.3333
p.K689N
DO43755
UCEC
ICGC
LRQRLKDLE
DEG_APCC_DBOX_1
0.3333
p.D683N
TCGA-BR-8680
STAD
TCGA
LRQRLKDLE
DEG_APCC_DBOX_1
0.5821
p.D683N
DO47769
STAD
ICGC
LRQRLKDLE
DEG_APCC_DBOX_1
0.5821
p.K668N
TCGA-EO-A22U
UCEC
TCGA
LRQRLKDLE
DEG_APCC_DBOX_1
0.1944
p.K668N
DO43755
UCEC
ICGC
LRQRLKDLE
DEG_APCC_DBOX_1
0.1944
p.L677I
TCGA-ND-A4WC
UCS
TCGA
LRQRLKDLE
DEG_APCC_DBOX_1
0.6063
p.E691D
DO229026
LICA
ICGC
LRQRLKDLE
DEG_APCC_DBOX_1
0.1667
p.D676A
SIDM00118
Colorectal Carcinoma
GDSC
LRQRLKDLE
DEG_APCC_DBOX_1
0.3056
p.D676A
ACH-001081
Colon/Colorectal Cancer
CCLE
LRQRLKDLE
DEG_APCC_DBOX_1
0.3056
p.D676A
HCC2998
large_intestine
COSMIC
LRQRLKDLE
DEG_APCC_DBOX_1
0.3056
p.R680T
SIDM01503
Small Cell Lung Carcinoma
GDSC
LRQRLKDLE
DEG_APCC_DBOX_1
0.6765
p.R680T
ACH-000844
Lung Cancer
CCLE
LRQRLKDLE
DEG_APCC_DBOX_1
0.6765
Drug responses associated with RNF20 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LRQRLKDLE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q5VTR2
E3 ubiquitin-protein ligase BRE1A
DEG_APCC_DBOX_1
677:685
LRQRLKDLE
APC,CDC20,FZR1
0.5126
More...