DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LRTNLQPLE
Uniprot ID:
Q9Y248
Source protein:
DNA replication complex GINS protein PSF2
Source gene:
GINS2
Class:
DEG_APCC_DBOX_1
Location:
170:178
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6832
ASA_SCORE:
95.7556
COIL:
0.6483
CONS_SCORE:
0.3021
DSS_SCORE:
0.4026
HELIX:
0.3399
FCONS_SCORE:
0.7945
RIG_SCORE:
0.781
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T172M
TCGA-AA-3831
COAD
TCGA
LRTNLQPLE
DEG_APCC_DBOX_1
0.6312
p.T172M
DO8538
COAD
ICGC
LRTNLQPLE
DEG_APCC_DBOX_1
0.6312
p.S182P
TCGA-AD-6889
COAD
TCGA
LRTNLQPLE
DEG_APCC_DBOX_1
0.6667
p.S182P
DO8463
COAD
ICGC
LRTNLQPLE
DEG_APCC_DBOX_1
0.6667
p.F185L
TCGA-IR-A3LH
CESC
TCGA
LRTNLQPLE
DEG_APCC_DBOX_1
0.1389
p.F185L
DO44381
CESC
ICGC
LRTNLQPLE
DEG_APCC_DBOX_1
0.1389
p.N173K
DO228974
LICA
ICGC
LRTNLQPLE
DEG_APCC_DBOX_1
0.5806
p.A163E
DO229019
LICA
ICGC
LRTNLQPLE
DEG_APCC_DBOX_1
0.1389
p.D184G
SIDM01175
Other Sarcomas
GDSC
LRTNLQPLE
DEG_APCC_DBOX_1
0.1667
p.D184G
ACH-002309
Sarcoma
CCLE
LRTNLQPLE
DEG_APCC_DBOX_1
0.1667
p.D184G
SW684
soft_tissue
COSMIC
LRTNLQPLE
DEG_APCC_DBOX_1
0.1667
p.L170F
SIDM00217
Colorectal Carcinoma
GDSC
LRTNLQPLE
DEG_APCC_DBOX_1
0.587
p.L170F
ACH-000999
Colon/Colorectal Cancer
CCLE
LRTNLQPLE
DEG_APCC_DBOX_1
0.587
p.L170F
SNU-1040
large_intestine
COSMIC
LRTNLQPLE
DEG_APCC_DBOX_1
0.587
Drug responses associated with GINS2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LRTNLQPLE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9Y248
DNA replication complex GINS protein PSF2
DEG_APCC_DBOX_1
170:178
LRTNLQPLE
APC,CDC20,FZR1
0.6832
More...