DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
LRVFTD
Uniprot ID:
O15484
Source protein:
Calpain-5
Source gene:
CAPN5
Class:
LIG_APCC_ABBA_1
Location:
485:490
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5198
ASA_SCORE:
23.9667
COIL:
0.1873
CONS_SCORE:
0.5705
DSS_SCORE:
0.2177
HELIX:
0.0005
FCONS_SCORE:
1.5509
RIG_SCORE:
0.9008
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E476D
TCGA-13-0760
OV
TCGA
LRVFTD
LIG_APCC_ABBA_1
0.0833
p.E476D
DO28541
OV
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.0833
p.G481D
TCGA-A5-A1OF
UCEC
TCGA
LRVFTD
LIG_APCC_ABBA_1
0.2222
p.G481D
TCGA-AG-3592
READ
TCGA
LRVFTD
LIG_APCC_ABBA_1
0.2222
p.G481D
DO37308
READ
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.2222
p.G481D
DO42568
UCEC
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.2222
p.R496Q
TCGA-A6-6781
COAD
TCGA
LRVFTD
LIG_APCC_ABBA_1
0.1667
p.R496Q
DO8447
COAD
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.1667
p.R499C
TCGA-AP-A1DO
UCEC
TCGA
LRVFTD
LIG_APCC_ABBA_1
0.0833
p.R499C
DO218910
SKCA
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.0833
p.R499C
DO43250
UCEC
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.0833
p.R499H
TCGA-B5-A11Y
UCEC
TCGA
LRVFTD
LIG_APCC_ABBA_1
0.0833
p.R499H
TCGA-EO-A22R
UCEC
TCGA
LRVFTD
LIG_APCC_ABBA_1
0.0833
p.R499H
DO40889
UCEC
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.0833
p.R499H
DO42713
UCEC
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.0833
p.D490N
TCGA-CV-A468
HNSC
TCGA
LRVFTD
LIG_APCC_ABBA_1
0.6932
p.D490N
DO52070
HNSC
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.6932
p.E497G
TCGA-DF-A2KU
UCEC
TCGA
LRVFTD
LIG_APCC_ABBA_1
0.1389
p.E497G
DO223286
UCEC
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.1389
p.P492S
TCGA-ER-A19N
SKCM
TCGA
LRVFTD
LIG_APCC_ABBA_1
0.2778
p.P492S
DO37452
SKCM
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.2778
p.P492S
SIDM00003
Melanoma
GDSC
LRVFTD
LIG_APCC_ABBA_1
0.2778
p.P492S
M14
skin
COSMIC
LRVFTD
LIG_APCC_ABBA_1
0.2778
p.R496W
TCGA-HU-A4GX
STAD
TCGA
LRVFTD
LIG_APCC_ABBA_1
0.1667
p.R496W
DO47757
STAD
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.1667
p.R496L
DO230346
COCA
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.1667
p.V487F
DO229028
LICA
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.7068
p.G478S
DO50834
LIRI
ICGC
LRVFTD
LIG_APCC_ABBA_1
0.1389
p.N494S
SIDM00625
Other Sarcomas
GDSC
LRVFTD
LIG_APCC_ABBA_1
0.2222
p.N494S
MES-SA
soft_tissue
COSMIC
LRVFTD
LIG_APCC_ABBA_1
0.2222
p.R500L
ACH-000781
Lung Cancer
CCLE
LRVFTD
LIG_APCC_ABBA_1
0.0556
p.R500L
NCI-H2023
lung
COSMIC
LRVFTD
LIG_APCC_ABBA_1
0.0556
p.K485E
IHH-4
thyroid
COSMIC
LRVFTD
LIG_APCC_ABBA_1
0.7022
Drug responses associated with CAPN5 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LRVFTD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15484
Calpain-5
LIG_APCC_ABBA_1
485:490
LRVFTD
APC,CDC20,FZR1
0.5198
More...