DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LSDTPAKS
Uniprot ID:
Q9H9C1
Source protein:
Spermatogenesis-defective protein 39 homolog
Source gene:
VIPAS39
Class:
DEG_SCF_FBW7_1
Location:
129:136
E3 ligase:
FBXW7
DEGRON score:
0.8903
ASA_SCORE:
77.0875
COIL:
0.7256
CONS_SCORE:
0.3969
DSS_SCORE:
0.5174
HELIX:
0.2358
FCONS_SCORE:
0.944
RIG_SCORE:
0.6861
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.F122V
TCGA-AX-A06F
UCEC
TCGA
LSDTPAKS
DEG_SCF_FBW7_1
0.1389
p.A138V
TCGA-EE-A3AA
SKCM
TCGA
LSDTPAKS
DEG_SCF_FBW7_1
0.2778
p.G120E
TCGA-FD-A3SS
BLCA
TCGA
LSDTPAKS
DEG_SCF_FBW7_1
0.0833
p.G146E
DO737
BLCA
ICGC
LSDTPAKS
DEG_SCF_FBW7_1
0.0556
p.F120L
DO10068
COAD
ICGC
LSDTPAKS
DEG_SCF_FBW7_1
0.0833
p.G141D
DO18036
KIRC
ICGC
LSDTPAKS
DEG_SCF_FBW7_1
0.1944
p.S119G
DO41331
UCEC
ICGC
LSDTPAKS
DEG_SCF_FBW7_1
0.0556
p.R143K
SIDM01116
Non-Small Cell Lung Carcinoma
GDSC
LSDTPAKS
DEG_SCF_FBW7_1
0.1389
p.R143K
ACH-000789
Lung Cancer
CCLE
LSDTPAKS
DEG_SCF_FBW7_1
0.1389
p.R143K
NCI-H810
lung
COSMIC
LSDTPAKS
DEG_SCF_FBW7_1
0.1389
p.D131N
SIDM01664
Prostate Carcinoma
GDSC
LSDTPAKS
DEG_SCF_FBW7_1
0.5821
p.D131N
ACH-000952
Prostate Cancer
CCLE
LSDTPAKS
DEG_SCF_FBW7_1
0.5821
p.Y137C
SIDM01662
Plasma Cell Myeloma
GDSC
LSDTPAKS
DEG_SCF_FBW7_1
0.3056
p.Y137C
ACH-000564
Myeloma
CCLE
LSDTPAKS
DEG_SCF_FBW7_1
0.3056
p.Q123L
ACH-002669
Colon/Colorectal Cancer
CCLE
LSDTPAKS
DEG_SCF_FBW7_1
0.1667
Drug responses associated with VIPAS39 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LSDTPAKS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9H9C1
Spermatogenesis-defective protein 39 homolog
DEG_SCF_FBW7_1
129:136
LSDTPAKS
FBXW7
0.8903
More...