DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LSPFED
Uniprot ID:
P48634
Source protein:
Protein PRRC2A
Source gene:
PRRC2A
Class:
LIG_APCC_ABBA_1
Location:
1635:1640
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9151
ASA_SCORE:
86.5667
COIL:
0.8275
CONS_SCORE:
0.5819
DSS_SCORE:
0.5662
HELIX:
0.1443
FCONS_SCORE:
1.0182
RIG_SCORE:
0.7231
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P1637L
TCGA-DA-A1IC
SKCM
TCGA
LSPFED
LIG_APCC_ABBA_1
0.6471
p.P1637L
TCGA-QB-A6FS
SKCM
TCGA
LSPFED
LIG_APCC_ABBA_1
0.6471
p.P1637L
DO37430
SKCM
ICGC
LSPFED
LIG_APCC_ABBA_1
0.6471
p.P1637L
DO48654
SKCM
ICGC
LSPFED
LIG_APCC_ABBA_1
0.6471
p.E1645Q
TCGA-GV-A3JX
BLCA
TCGA
LSPFED
LIG_APCC_ABBA_1
0.1944
p.E1645Q
DO448
BLCA
ICGC
LSPFED
LIG_APCC_ABBA_1
0.1944
p.M1632V
DO220896
MELA
ICGC
LSPFED
LIG_APCC_ABBA_1
0.25
Drug responses associated with PRRC2A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LSPFED
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P48634
Protein PRRC2A
LIG_APCC_ABBA_1
1635:1640
LSPFED
APC,CDC20,FZR1
0.9151
More...