DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
LSPFQD
Uniprot ID:
P56975
Source protein:
Pro-neuregulin-3, membrane-bound isoform
Source gene:
NRG3
Class:
LIG_APCC_ABBA_1
Location:
244:249
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9998
ASA_SCORE:
80.3167
COIL:
0.8267
CONS_SCORE:
0.3711
DSS_SCORE:
0.4566
HELIX:
0.0678
FCONS_SCORE:
0.9863
RIG_SCORE:
0.7135
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S238P
TCGA-MH-A55W
KIRP
TCGA
LSPFQD
LIG_APCC_ABBA_1
0.1667
p.S238P
DO48516
KIRP
ICGC
LSPFQD
LIG_APCC_ABBA_1
0.1667
p.D237N
DO222884
COCA
ICGC
LSPFQD
LIG_APCC_ABBA_1
0.1389
p.W242S
DO233730
GACA
ICGC
LSPFQD
LIG_APCC_ABBA_1
0.2778
p.G259V
DO20786
KIRP
ICGC
LSPFQD
LIG_APCC_ABBA_1
0.0556
p.P234S
DO228589
LICA
ICGC
LSPFQD
LIG_APCC_ABBA_1
0.0556
p.P237S
DO231797
LINC
ICGC
LSPFQD
LIG_APCC_ABBA_1
0.1389
p.H248Y
DO25153
LUAD
ICGC
LSPFQD
LIG_APCC_ABBA_1
0.7229
p.C255S
DO231155
LUSC
ICGC
LSPFQD
LIG_APCC_ABBA_1
0.6111
p.S259F
DO222702
MELA
ICGC
LSPFQD
LIG_APCC_ABBA_1
0.0556
p.S245P
DO232761
PBCA
ICGC
LSPFQD
LIG_APCC_ABBA_1
0.5641
p.G259R
DO51301
SKCM
ICGC
LSPFQD
LIG_APCC_ABBA_1
0.0556
p.P237T
DO219464
SKCM
ICGC
LSPFQD
LIG_APCC_ABBA_1
0.1389
p.P258T
DO41584
UCEC
ICGC
LSPFQD
LIG_APCC_ABBA_1
0.0833
p.S245Y
DO41133
UCEC
ICGC
LSPFQD
LIG_APCC_ABBA_1
0.6009
p.V259F
SNG-M
endometrium
COSMIC
LSPFQD
LIG_APCC_ABBA_1
0.0556
p.D258E
NCI-H1581
lung
COSMIC
LSPFQD
LIG_APCC_ABBA_1
0.0833
p.R241K
K2
skin
COSMIC
LSPFQD
LIG_APCC_ABBA_1
0.25
p.P259H
HMV-II
skin
COSMIC
LSPFQD
LIG_APCC_ABBA_1
0.0556
p.P240S
MRK-nu-1
breast
COSMIC
LSPFQD
LIG_APCC_ABBA_1
0.2222
p.A244T
OC-314
ovary
COSMIC
LSPFQD
LIG_APCC_ABBA_1
0.7139
p.P234H
HMV-II
skin
COSMIC
LSPFQD
LIG_APCC_ABBA_1
0.0556
p.V259I
OCI-LY-19
haematopoietic_and_lymphoid_tissue
COSMIC
LSPFQD
LIG_APCC_ABBA_1
0.0556
p.S241I
SNU-1040
large_intestine
COSMIC
LSPFQD
LIG_APCC_ABBA_1
0.25
p.P255L
KYSE-510
oesophagus
COSMIC
LSPFQD
LIG_APCC_ABBA_1
0.6111
Drug responses associated with NRG3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LSPFQD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P56975
Pro-neuregulin-3, membrane-bound isoform
LIG_APCC_ABBA_1
244:249
LSPFQD
APC,CDC20,FZR1
0.9998
More...