DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LSRTPTAT
Uniprot ID:
O00268
Source protein:
Transcription initiation factor TFIID subunit 4
Source gene:
TAF4
Class:
DEG_SCF_FBW7_1
Location:
412:419
E3 ligase:
FBXW7
DEGRON score:
0.9922
ASA_SCORE:
94.95
COIL:
0.9399
CONS_SCORE:
0.3732
DSS_SCORE:
0.604
HELIX:
0.0206
FCONS_SCORE:
1.1592
RIG_SCORE:
0.6755
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A425S
DO555
BLCA
ICGC
LSRTPTAT
DEG_SCF_FBW7_1
0.1667
p.T419P
DO233693
GACA
ICGC
LSRTPTAT
DEG_SCF_FBW7_1
0.7031
p.T419P
ACH-001356
Thyroid Cancer
CCLE
LSRTPTAT
DEG_SCF_FBW7_1
0.7031
p.A404E
DO228940
LICA
ICGC
LSRTPTAT
DEG_SCF_FBW7_1
0.1111
p.L427M
DO228952
LICA
ICGC
LSRTPTAT
DEG_SCF_FBW7_1
0.1111
p.L412M
DO229026
LICA
ICGC
LSRTPTAT
DEG_SCF_FBW7_1
0.5999
p.A425D
SIDM01314
Colorectal Carcinoma
GDSC
LSRTPTAT
DEG_SCF_FBW7_1
0.1667
Drug responses associated with TAF4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LSRTPTAT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00268
Transcription initiation factor TFIID subunit 4
DEG_SCF_FBW7_1
412:419
LSRTPTAT
FBXW7
0.9922
More...