DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
LSVFGD
Uniprot ID:
P17987
Source protein:
T-complex protein 1 subunit alpha
Source gene:
TCP1
Class:
LIG_APCC_ABBA_1
Location:
5:10
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9676
ASA_SCORE:
70.0667
COIL:
0.7623
CONS_SCORE:
0.3595
DSS_SCORE:
0.6542
HELIX:
0.1357
FCONS_SCORE:
0.9208
RIG_SCORE:
0.7327
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G9C
TCGA-D3-A3C6
SKCM
TCGA
LSVFGD
LIG_APCC_ABBA_1
0.6489
p.G9C
DO37507
SKCM
ICGC
LSVFGD
LIG_APCC_ABBA_1
0.6489
p.G9S
DO229135
LMS
ICGC
LSVFGD
LIG_APCC_ABBA_1
0.5882
p.P4S
TCGA-AA-3811
COAD
TCGA
LSVFGD
LIG_APCC_ABBA_1
0.3056
p.P4S
DO7962
COAD
ICGC
LSVFGD
LIG_APCC_ABBA_1
0.3056
p.I17M
SIDM00777
Colorectal Carcinoma
GDSC
LSVFGD
LIG_APCC_ABBA_1
0.1389
p.I17M
ACH-000360
Colon/Colorectal Cancer
CCLE
LSVFGD
LIG_APCC_ABBA_1
0.1389
p.I17M
NCI-H508
large_intestine
COSMIC
LSVFGD
LIG_APCC_ABBA_1
0.1389
p.R18S
TCGA-EE-A2GT
SKCM
TCGA
LSVFGD
LIG_APCC_ABBA_1
0.1111
p.R18S
DO37946
SKCM
ICGC
LSVFGD
LIG_APCC_ABBA_1
0.1111
p.Q20E
DO229493
LAML
ICGC
LSVFGD
LIG_APCC_ABBA_1
0.0556
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Drug responses associated with TCP1 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of LSVFGD
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P17987
T-complex protein 1 subunit alpha
LIG_APCC_ABBA_1
5:10
LSVFGD
APC,CDC20,FZR1
0.9676
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